Gene : Cagra.0612s0004 C. grandiflora v1.1
Defline:  (1 of 1) KOG3920 - Uncharacterized conserved protein, contains PA domain Genomic Order:  4
Name:  ? Cagra.0612s0004 Secondary Identifier:  ? PAC:28917617
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0612s0004 0.5kb upstream 0.5kb upstream 5055 true Scaffold612: 16145-21199 Capsella grandiflora
Cagra.0612s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold612: 16145-16644 Capsella grandiflora
Cagra.0612s0004 0.5kb downstream 0.5kb downstream 5055 true Scaffold612: 16645-21699 Capsella grandiflora
Cagra.0612s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold612: 21200-21699 Capsella grandiflora
Cagra.0612s0004 1.0kb upstream 1.0kb upstream 5555 true Scaffold612: 15645-21199 Capsella grandiflora
Cagra.0612s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold612: 15645-16644 Capsella grandiflora
Cagra.0612s0004 1.0kb downstream 1.0kb downstream 5555 true Scaffold612: 16645-22199 Capsella grandiflora
Cagra.0612s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold612: 21200-22199 Capsella grandiflora
Cagra.0612s0004 2.0kb upstream 2.0kb upstream 6555 true Scaffold612: 14645-21199 Capsella grandiflora
Cagra.0612s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold612: 14645-16644 Capsella grandiflora
Cagra.0612s0004 2.0kb downstream 2.0kb downstream 6555 true Scaffold612: 16645-23199 Capsella grandiflora
Cagra.0612s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold612: 21200-23199 Capsella grandiflora
Cagra.0612s0004 5.0kb upstream 5.0kb upstream 9555 true Scaffold612: 11645-21199 Capsella grandiflora
Cagra.0612s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold612: 11645-16644 Capsella grandiflora
Cagra.0612s0004 5.0kb downstream 5.0kb downstream 9555 true Scaffold612: 16645-26199 Capsella grandiflora
Cagra.0612s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold612: 21200-26199 Capsella grandiflora
Cagra.0612s0004 10.0kb upstream 10.0kb upstream 14555 true Scaffold612: 6645-21199 Capsella grandiflora
Cagra.0612s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold612: 6645-16644 Capsella grandiflora
Cagra.0612s0004 10.0kb downstream 10.0kb downstream 14555 true Scaffold612: 16645-31199 Capsella grandiflora
Cagra.0612s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold612: 21200-31199 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372517 5261 Brassicaceae View MSA
123839164 5264 Brassicales-Malvales View MSA
124337452 5266 SBM View MSA
124239703 5268 Malvidae View MSA
124068352 5270 Rosid View MSA
123747014 5271 Pentapetalae View MSA
122793065 5272 Eudicot View MSA
122047431 5273 Angiosperm View MSA
121350422 5274 Embryophyte View MSA
123428728 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain