Gene : Cagra.0612s0032 C. grandiflora v1.1
Defline:  (1 of 7) PTHR11254 - HECT DOMAIN UBIQUITIN-PROTEIN LIGASE Genomic Order:  32
Name:  ? Cagra.0612s0032 Secondary Identifier:  ? PAC:28917562
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0612s0032 0.5kb upstream 0.5kb upstream 4907 true Scaffold612: 110374-115280 Capsella grandiflora
Cagra.0612s0032 0.5kb upstream 0.5kb upstream 500 false Scaffold612: 110374-110873 Capsella grandiflora
Cagra.0612s0032 0.5kb downstream 0.5kb downstream 4907 true Scaffold612: 110874-115780 Capsella grandiflora
Cagra.0612s0032 0.5kb downstream 0.5kb downstream 500 false Scaffold612: 115281-115780 Capsella grandiflora
Cagra.0612s0032 1.0kb upstream 1.0kb upstream 5407 true Scaffold612: 109874-115280 Capsella grandiflora
Cagra.0612s0032 1.0kb upstream 1.0kb upstream 1000 false Scaffold612: 109874-110873 Capsella grandiflora
Cagra.0612s0032 1.0kb downstream 1.0kb downstream 5407 true Scaffold612: 110874-116280 Capsella grandiflora
Cagra.0612s0032 1.0kb downstream 1.0kb downstream 1000 false Scaffold612: 115281-116280 Capsella grandiflora
Cagra.0612s0032 2.0kb upstream 2.0kb upstream 6407 true Scaffold612: 108874-115280 Capsella grandiflora
Cagra.0612s0032 2.0kb upstream 2.0kb upstream 2000 false Scaffold612: 108874-110873 Capsella grandiflora
Cagra.0612s0032 2.0kb downstream 2.0kb downstream 6407 true Scaffold612: 110874-117280 Capsella grandiflora
Cagra.0612s0032 2.0kb downstream 2.0kb downstream 2000 false Scaffold612: 115281-117280 Capsella grandiflora
Cagra.0612s0032 5.0kb upstream 5.0kb upstream 9407 true Scaffold612: 105874-115280 Capsella grandiflora
Cagra.0612s0032 5.0kb upstream 5.0kb upstream 5000 false Scaffold612: 105874-110873 Capsella grandiflora
Cagra.0612s0032 5.0kb downstream 5.0kb downstream 9407 true Scaffold612: 110874-120280 Capsella grandiflora
Cagra.0612s0032 5.0kb downstream 5.0kb downstream 5000 false Scaffold612: 115281-120280 Capsella grandiflora
Cagra.0612s0032 10.0kb upstream 10.0kb upstream 14407 true Scaffold612: 100874-115280 Capsella grandiflora
Cagra.0612s0032 10.0kb upstream 10.0kb upstream 10000 false Scaffold612: 100874-110873 Capsella grandiflora
Cagra.0612s0032 10.0kb downstream 10.0kb downstream 14407 true Scaffold612: 110874-125280 Capsella grandiflora
Cagra.0612s0032 10.0kb downstream 10.0kb downstream 10000 false Scaffold612: 115281-125280 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367039 5261 Brassicaceae View MSA
123827587 5264 Brassicales-Malvales View MSA
124346572 5266 SBM View MSA
124252639 5268 Malvidae View MSA
124065760 5270 Rosid View MSA
123737097 5271 Pentapetalae View MSA
122793139 5272 Eudicot View MSA
122047566 5273 Angiosperm View MSA
123429069 5275 Viridiplantae View MSA
121351552 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain