Gene : Cagra.0575s0002 C. grandiflora v1.1
Defline:  (1 of 2) PTHR11638//PTHR11638:SF105 - ATP-DEPENDENT CLP PROTEASE Genomic Order:  2
Name:  ? Cagra.0575s0002 Secondary Identifier:  ? PAC:28916178
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0575s0002 0.5kb upstream 0.5kb upstream 2189 true Scaffold575: 15280-17468 Capsella grandiflora
Cagra.0575s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold575: 16969-17468 Capsella grandiflora
Cagra.0575s0002 0.5kb downstream 0.5kb downstream 2189 true Scaffold575: 14780-16968 Capsella grandiflora
Cagra.0575s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold575: 14780-15279 Capsella grandiflora
Cagra.0575s0002 1.0kb upstream 1.0kb upstream 2689 true Scaffold575: 15280-17968 Capsella grandiflora
Cagra.0575s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold575: 16969-17968 Capsella grandiflora
Cagra.0575s0002 1.0kb downstream 1.0kb downstream 2689 true Scaffold575: 14280-16968 Capsella grandiflora
Cagra.0575s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold575: 14280-15279 Capsella grandiflora
Cagra.0575s0002 2.0kb upstream 2.0kb upstream 3689 true Scaffold575: 15280-18968 Capsella grandiflora
Cagra.0575s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold575: 16969-18968 Capsella grandiflora
Cagra.0575s0002 2.0kb downstream 2.0kb downstream 3689 true Scaffold575: 13280-16968 Capsella grandiflora
Cagra.0575s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold575: 13280-15279 Capsella grandiflora
Cagra.0575s0002 5.0kb upstream 5.0kb upstream 6689 true Scaffold575: 15280-21968 Capsella grandiflora
Cagra.0575s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold575: 16969-21968 Capsella grandiflora
Cagra.0575s0002 5.0kb downstream 5.0kb downstream 6689 true Scaffold575: 10280-16968 Capsella grandiflora
Cagra.0575s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold575: 10280-15279 Capsella grandiflora
Cagra.0575s0002 10.0kb upstream 10.0kb upstream 11689 true Scaffold575: 15280-26968 Capsella grandiflora
Cagra.0575s0002 10.0kb upstream 10.0kb upstream 10000 false Scaffold575: 16969-26968 Capsella grandiflora
Cagra.0575s0002 10.0kb downstream 10.0kb downstream 11689 true Scaffold575: 5280-16968 Capsella grandiflora
Cagra.0575s0002 10.0kb downstream 10.0kb downstream 10000 false Scaffold575: 5280-15279 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370401 5261 Brassicaceae View MSA
123827761 5264 Brassicales-Malvales View MSA
124343132 5266 SBM View MSA
124252123 5268 Malvidae View MSA
124064515 5270 Rosid View MSA
123741380 5271 Pentapetalae View MSA
122789129 5272 Eudicot View MSA
122047723 5273 Angiosperm View MSA
121348075 5274 Embryophyte View MSA
123425862 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain