Gene : Cagra.0578s0024 C. grandiflora v1.1
Defline:  (1 of 1) 1.14.13.81 - Magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase / Mg-protoporphyrin IX monomethyl ester oxidative cyclase Genomic Order:  24
Name:  ? Cagra.0578s0024 Secondary Identifier:  ? PAC:28898681
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora CHLOROPHYLL-SYN Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0578s0024 0.5kb upstream 0.5kb upstream 2284 true Scaffold578: 75850-78133 Capsella grandiflora
Cagra.0578s0024 0.5kb upstream 0.5kb upstream 500 false Scaffold578: 75850-76349 Capsella grandiflora
Cagra.0578s0024 0.5kb downstream 0.5kb downstream 2284 true Scaffold578: 76350-78633 Capsella grandiflora
Cagra.0578s0024 0.5kb downstream 0.5kb downstream 500 false Scaffold578: 78134-78633 Capsella grandiflora
Cagra.0578s0024 1.0kb upstream 1.0kb upstream 2784 true Scaffold578: 75350-78133 Capsella grandiflora
Cagra.0578s0024 1.0kb upstream 1.0kb upstream 1000 false Scaffold578: 75350-76349 Capsella grandiflora
Cagra.0578s0024 1.0kb downstream 1.0kb downstream 2784 true Scaffold578: 76350-79133 Capsella grandiflora
Cagra.0578s0024 1.0kb downstream 1.0kb downstream 1000 false Scaffold578: 78134-79133 Capsella grandiflora
Cagra.0578s0024 2.0kb upstream 2.0kb upstream 3784 true Scaffold578: 74350-78133 Capsella grandiflora
Cagra.0578s0024 2.0kb upstream 2.0kb upstream 2000 false Scaffold578: 74350-76349 Capsella grandiflora
Cagra.0578s0024 2.0kb downstream 2.0kb downstream 3784 true Scaffold578: 76350-80133 Capsella grandiflora
Cagra.0578s0024 2.0kb downstream 2.0kb downstream 2000 false Scaffold578: 78134-80133 Capsella grandiflora
Cagra.0578s0024 5.0kb upstream 5.0kb upstream 6784 true Scaffold578: 71350-78133 Capsella grandiflora
Cagra.0578s0024 5.0kb upstream 5.0kb upstream 5000 false Scaffold578: 71350-76349 Capsella grandiflora
Cagra.0578s0024 5.0kb downstream 5.0kb downstream 6784 true Scaffold578: 76350-83133 Capsella grandiflora
Cagra.0578s0024 5.0kb downstream 5.0kb downstream 5000 false Scaffold578: 78134-83133 Capsella grandiflora
Cagra.0578s0024 10.0kb upstream 10.0kb upstream 11784 true Scaffold578: 66350-78133 Capsella grandiflora
Cagra.0578s0024 10.0kb upstream 10.0kb upstream 10000 false Scaffold578: 66350-76349 Capsella grandiflora
Cagra.0578s0024 10.0kb downstream 10.0kb downstream 11784 true Scaffold578: 76350-88133 Capsella grandiflora
Cagra.0578s0024 10.0kb downstream 10.0kb downstream 10000 false Scaffold578: 78134-88133 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366921 5261 Brassicaceae View MSA
123839485 5264 Brassicales-Malvales View MSA
124337176 5266 SBM View MSA
124242983 5268 Malvidae View MSA
124064465 5270 Rosid View MSA
123737213 5271 Pentapetalae View MSA
122789972 5272 Eudicot View MSA
122044823 5273 Angiosperm View MSA
121345959 5274 Embryophyte View MSA
123424479 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain