Gene : Cagra.0569s0004 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11712:SF226 - 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE I, CHLOROPLASTIC Genomic Order:  4
Name:  ? Cagra.0569s0004 Secondary Identifier:  ? PAC:28894976
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora FASYN-ELONG-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-5156 Capsella grandiflora pathologic  
Cgrandiflora PWY-5971 Capsella grandiflora pathologic  
Cgrandiflora PWY-5989 Capsella grandiflora pathologic  
Cgrandiflora PWY-6282 Capsella grandiflora pathologic  
Cgrandiflora PWY-7388 Capsella grandiflora pathologic  
Cgrandiflora PWY-7663 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0569s0004 0.5kb upstream 0.5kb upstream 3293 true Scaffold569: 14783-18075 Capsella grandiflora
Cagra.0569s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold569: 17576-18075 Capsella grandiflora
Cagra.0569s0004 0.5kb downstream 0.5kb downstream 3293 true Scaffold569: 14283-17575 Capsella grandiflora
Cagra.0569s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold569: 14283-14782 Capsella grandiflora
Cagra.0569s0004 1.0kb upstream 1.0kb upstream 3793 true Scaffold569: 14783-18575 Capsella grandiflora
Cagra.0569s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold569: 17576-18575 Capsella grandiflora
Cagra.0569s0004 1.0kb downstream 1.0kb downstream 3793 true Scaffold569: 13783-17575 Capsella grandiflora
Cagra.0569s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold569: 13783-14782 Capsella grandiflora
Cagra.0569s0004 2.0kb upstream 2.0kb upstream 4793 true Scaffold569: 14783-19575 Capsella grandiflora
Cagra.0569s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold569: 17576-19575 Capsella grandiflora
Cagra.0569s0004 2.0kb downstream 2.0kb downstream 4793 true Scaffold569: 12783-17575 Capsella grandiflora
Cagra.0569s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold569: 12783-14782 Capsella grandiflora
Cagra.0569s0004 5.0kb upstream 5.0kb upstream 7793 true Scaffold569: 14783-22575 Capsella grandiflora
Cagra.0569s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold569: 17576-22575 Capsella grandiflora
Cagra.0569s0004 5.0kb downstream 5.0kb downstream 7793 true Scaffold569: 9783-17575 Capsella grandiflora
Cagra.0569s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold569: 9783-14782 Capsella grandiflora
Cagra.0569s0004 10.0kb upstream 10.0kb upstream 12793 true Scaffold569: 14783-27575 Capsella grandiflora
Cagra.0569s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold569: 17576-27575 Capsella grandiflora
Cagra.0569s0004 10.0kb downstream 10.0kb downstream 12793 true Scaffold569: 4783-17575 Capsella grandiflora
Cagra.0569s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold569: 4783-14782 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363213 5261 Brassicaceae View MSA
123833977 5264 Brassicales-Malvales View MSA
124343776 5266 SBM View MSA
124240584 5268 Malvidae View MSA
124064004 5270 Rosid View MSA
123747178 5271 Pentapetalae View MSA
122792015 5272 Eudicot View MSA
122044089 5273 Angiosperm View MSA
121347391 5274 Embryophyte View MSA
123426303 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain