Gene : Cagra.0775s0002 C. grandiflora v1.1
Defline:  (1 of 3) PF00564//PF03108//PF04434//PF10551 - PB1 domain (PB1) // MuDR family transposase (DBD_Tnp_Mut) // SWIM zinc finger (SWIM) // MULE transposase domain (MULE) Genomic Order:  2
Name:  ? Cagra.0775s0002 Secondary Identifier:  ? PAC:28914752
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0775s0002 0.5kb upstream 0.5kb upstream 3409 true Scaffold775: 11110-14518 Capsella grandiflora
Cagra.0775s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold775: 11110-11609 Capsella grandiflora
Cagra.0775s0002 0.5kb downstream 0.5kb downstream 3409 true Scaffold775: 11610-15018 Capsella grandiflora
Cagra.0775s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold775: 14519-15018 Capsella grandiflora
Cagra.0775s0002 1.0kb upstream 1.0kb upstream 3909 true Scaffold775: 10610-14518 Capsella grandiflora
Cagra.0775s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold775: 10610-11609 Capsella grandiflora
Cagra.0775s0002 1.0kb downstream 1.0kb downstream 3909 true Scaffold775: 11610-15518 Capsella grandiflora
Cagra.0775s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold775: 14519-15518 Capsella grandiflora
Cagra.0775s0002 2.0kb upstream 2.0kb upstream 4909 true Scaffold775: 9610-14518 Capsella grandiflora
Cagra.0775s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold775: 9610-11609 Capsella grandiflora
Cagra.0775s0002 2.0kb downstream 2.0kb downstream 4909 true Scaffold775: 11610-16518 Capsella grandiflora
Cagra.0775s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold775: 14519-16518 Capsella grandiflora
Cagra.0775s0002 5.0kb upstream 5.0kb upstream 7909 true Scaffold775: 6610-14518 Capsella grandiflora
Cagra.0775s0002 5.0kb upstream 5.0kb upstream 5000 false Scaffold775: 6610-11609 Capsella grandiflora
Cagra.0775s0002 5.0kb downstream 5.0kb downstream 7909 true Scaffold775: 11610-19518 Capsella grandiflora
Cagra.0775s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold775: 14519-19518 Capsella grandiflora
Cagra.0775s0002 10.0kb upstream 10.0kb upstream 12909 true Scaffold775: 1610-14518 Capsella grandiflora
Cagra.0775s0002 10.0kb upstream 10.0kb upstream 10000 false Scaffold775: 1610-11609 Capsella grandiflora
Cagra.0775s0002 10.0kb downstream 10.0kb downstream 9930 true Scaffold775: 11610-21539 Capsella grandiflora
Cagra.0775s0002 10.0kb downstream 10.0kb downstream 7021 false Scaffold775: 14519-21539 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376209 5261 Brassicaceae View MSA
123837837 5264 Brassicales-Malvales View MSA
124339946 5266 SBM View MSA
124239535 5268 Malvidae View MSA
124072231 5270 Rosid View MSA
123753345 5271 Pentapetalae View MSA
122797917 5272 Eudicot View MSA
122051679 5273 Angiosperm View MSA
121351767 5274 Embryophyte View MSA
123382313 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain