Gene : Cagra.0701s0023 C. grandiflora v1.1
Defline:  (1 of 4) PTHR23023:SF37 - INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA2-RELATED Genomic Order:  23
Name:  ? Cagra.0701s0023 Secondary Identifier:  ? PAC:28913778
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWYDQC-4 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0701s0023 0.5kb upstream 0.5kb upstream 3878 true Scaffold701: 84254-88131 Capsella grandiflora
Cagra.0701s0023 0.5kb upstream 0.5kb upstream 500 false Scaffold701: 87632-88131 Capsella grandiflora
Cagra.0701s0023 0.5kb downstream 0.5kb downstream 3878 true Scaffold701: 83754-87631 Capsella grandiflora
Cagra.0701s0023 0.5kb downstream 0.5kb downstream 500 false Scaffold701: 83754-84253 Capsella grandiflora
Cagra.0701s0023 1.0kb upstream 1.0kb upstream 4378 true Scaffold701: 84254-88631 Capsella grandiflora
Cagra.0701s0023 1.0kb upstream 1.0kb upstream 1000 false Scaffold701: 87632-88631 Capsella grandiflora
Cagra.0701s0023 1.0kb downstream 1.0kb downstream 4378 true Scaffold701: 83254-87631 Capsella grandiflora
Cagra.0701s0023 1.0kb downstream 1.0kb downstream 1000 false Scaffold701: 83254-84253 Capsella grandiflora
Cagra.0701s0023 2.0kb upstream 2.0kb upstream 5378 true Scaffold701: 84254-89631 Capsella grandiflora
Cagra.0701s0023 2.0kb upstream 2.0kb upstream 2000 false Scaffold701: 87632-89631 Capsella grandiflora
Cagra.0701s0023 2.0kb downstream 2.0kb downstream 5378 true Scaffold701: 82254-87631 Capsella grandiflora
Cagra.0701s0023 2.0kb downstream 2.0kb downstream 2000 false Scaffold701: 82254-84253 Capsella grandiflora
Cagra.0701s0023 5.0kb upstream 5.0kb upstream 8378 true Scaffold701: 84254-92631 Capsella grandiflora
Cagra.0701s0023 5.0kb upstream 5.0kb upstream 5000 false Scaffold701: 87632-92631 Capsella grandiflora
Cagra.0701s0023 5.0kb downstream 5.0kb downstream 8378 true Scaffold701: 79254-87631 Capsella grandiflora
Cagra.0701s0023 5.0kb downstream 5.0kb downstream 5000 false Scaffold701: 79254-84253 Capsella grandiflora
Cagra.0701s0023 10.0kb upstream 10.0kb upstream 13378 true Scaffold701: 84254-97631 Capsella grandiflora
Cagra.0701s0023 10.0kb upstream 10.0kb upstream 10000 false Scaffold701: 87632-97631 Capsella grandiflora
Cagra.0701s0023 10.0kb downstream 10.0kb downstream 13378 true Scaffold701: 74254-87631 Capsella grandiflora
Cagra.0701s0023 10.0kb downstream 10.0kb downstream 10000 false Scaffold701: 74254-84253 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371447 5261 Brassicaceae View MSA
123834592 5264 Brassicales-Malvales View MSA
124345724 5266 SBM View MSA
124244331 5268 Malvidae View MSA
124069370 5270 Rosid View MSA
123747095 5271 Pentapetalae View MSA
122790040 5272 Eudicot View MSA
122050610 5273 Angiosperm View MSA
121351632 5274 Embryophyte View MSA
123426700 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain