Gene : Cagra.0712s0014 C. grandiflora v1.1
Defline:  (1 of 4) PTHR17204//PTHR17204:SF30 - PRE-MRNA PROCESSING PROTEIN PRP39-RELATED Genomic Order:  14
Name:  ? Cagra.0712s0014 Secondary Identifier:  ? PAC:28899900
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0712s0014 0.5kb upstream 0.5kb upstream 3432 true Scaffold712: 41823-45254 Capsella grandiflora
Cagra.0712s0014 0.5kb upstream 0.5kb upstream 500 false Scaffold712: 44755-45254 Capsella grandiflora
Cagra.0712s0014 0.5kb downstream 0.5kb downstream 3432 true Scaffold712: 41323-44754 Capsella grandiflora
Cagra.0712s0014 0.5kb downstream 0.5kb downstream 500 false Scaffold712: 41323-41822 Capsella grandiflora
Cagra.0712s0014 1.0kb upstream 1.0kb upstream 3932 true Scaffold712: 41823-45754 Capsella grandiflora
Cagra.0712s0014 1.0kb upstream 1.0kb upstream 1000 false Scaffold712: 44755-45754 Capsella grandiflora
Cagra.0712s0014 1.0kb downstream 1.0kb downstream 3932 true Scaffold712: 40823-44754 Capsella grandiflora
Cagra.0712s0014 1.0kb downstream 1.0kb downstream 1000 false Scaffold712: 40823-41822 Capsella grandiflora
Cagra.0712s0014 2.0kb upstream 2.0kb upstream 4932 true Scaffold712: 41823-46754 Capsella grandiflora
Cagra.0712s0014 2.0kb upstream 2.0kb upstream 2000 false Scaffold712: 44755-46754 Capsella grandiflora
Cagra.0712s0014 2.0kb downstream 2.0kb downstream 4932 true Scaffold712: 39823-44754 Capsella grandiflora
Cagra.0712s0014 2.0kb downstream 2.0kb downstream 2000 false Scaffold712: 39823-41822 Capsella grandiflora
Cagra.0712s0014 5.0kb upstream 5.0kb upstream 7932 true Scaffold712: 41823-49754 Capsella grandiflora
Cagra.0712s0014 5.0kb upstream 5.0kb upstream 5000 false Scaffold712: 44755-49754 Capsella grandiflora
Cagra.0712s0014 5.0kb downstream 5.0kb downstream 7932 true Scaffold712: 36823-44754 Capsella grandiflora
Cagra.0712s0014 5.0kb downstream 5.0kb downstream 5000 false Scaffold712: 36823-41822 Capsella grandiflora
Cagra.0712s0014 10.0kb upstream 10.0kb upstream 12932 true Scaffold712: 41823-54754 Capsella grandiflora
Cagra.0712s0014 10.0kb upstream 10.0kb upstream 10000 false Scaffold712: 44755-54754 Capsella grandiflora
Cagra.0712s0014 10.0kb downstream 10.0kb downstream 12932 true Scaffold712: 31823-44754 Capsella grandiflora
Cagra.0712s0014 10.0kb downstream 10.0kb downstream 10000 false Scaffold712: 31823-41822 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373589 5261 Brassicaceae View MSA
123800580 5264 Brassicales-Malvales View MSA
124350132 5266 SBM View MSA
124240078 5268 Malvidae View MSA
124062085 5270 Rosid View MSA
123746638 5271 Pentapetalae View MSA
122792580 5272 Eudicot View MSA
122047878 5273 Angiosperm View MSA
121349100 5274 Embryophyte View MSA
123426825 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain