Gene : Cagra.0686s0088 C. grandiflora v1.1
Defline:  (1 of 4) 2.3.3.1 - Citrate (Si)-synthase / Citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO->acetyl-CoA) Genomic Order:  88
Name:  ? Cagra.0686s0088 Secondary Identifier:  ? PAC:28901028
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora GLYOXYLATE-BYPASS Capsella grandiflora pathologic  
Cgrandiflora PWY-5464 Capsella grandiflora pathologic  
Cgrandiflora PWY-561 Capsella grandiflora pathologic  
Cgrandiflora PWY-5690 Capsella grandiflora pathologic  
Cgrandiflora PWY-6549 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0686s0088 0.5kb upstream 0.5kb upstream 3788 true Scaffold686: 293506-297293 Capsella grandiflora
Cagra.0686s0088 0.5kb upstream 0.5kb upstream 500 false Scaffold686: 296794-297293 Capsella grandiflora
Cagra.0686s0088 0.5kb downstream 0.5kb downstream 3788 true Scaffold686: 293006-296793 Capsella grandiflora
Cagra.0686s0088 0.5kb downstream 0.5kb downstream 500 false Scaffold686: 293006-293505 Capsella grandiflora
Cagra.0686s0088 1.0kb upstream 1.0kb upstream 4288 true Scaffold686: 293506-297793 Capsella grandiflora
Cagra.0686s0088 1.0kb upstream 1.0kb upstream 1000 false Scaffold686: 296794-297793 Capsella grandiflora
Cagra.0686s0088 1.0kb downstream 1.0kb downstream 4288 true Scaffold686: 292506-296793 Capsella grandiflora
Cagra.0686s0088 1.0kb downstream 1.0kb downstream 1000 false Scaffold686: 292506-293505 Capsella grandiflora
Cagra.0686s0088 2.0kb upstream 2.0kb upstream 5288 true Scaffold686: 293506-298793 Capsella grandiflora
Cagra.0686s0088 2.0kb upstream 2.0kb upstream 2000 false Scaffold686: 296794-298793 Capsella grandiflora
Cagra.0686s0088 2.0kb downstream 2.0kb downstream 5288 true Scaffold686: 291506-296793 Capsella grandiflora
Cagra.0686s0088 2.0kb downstream 2.0kb downstream 2000 false Scaffold686: 291506-293505 Capsella grandiflora
Cagra.0686s0088 5.0kb upstream 5.0kb upstream 8288 true Scaffold686: 293506-301793 Capsella grandiflora
Cagra.0686s0088 5.0kb upstream 5.0kb upstream 5000 false Scaffold686: 296794-301793 Capsella grandiflora
Cagra.0686s0088 5.0kb downstream 5.0kb downstream 8288 true Scaffold686: 288506-296793 Capsella grandiflora
Cagra.0686s0088 5.0kb downstream 5.0kb downstream 5000 false Scaffold686: 288506-293505 Capsella grandiflora
Cagra.0686s0088 10.0kb upstream 10.0kb upstream 10289 true Scaffold686: 293506-303794 Capsella grandiflora
Cagra.0686s0088 10.0kb upstream 10.0kb upstream 7001 false Scaffold686: 296794-303794 Capsella grandiflora
Cagra.0686s0088 10.0kb downstream 10.0kb downstream 13288 true Scaffold686: 283506-296793 Capsella grandiflora
Cagra.0686s0088 10.0kb downstream 10.0kb downstream 10000 false Scaffold686: 283506-293505 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373975 5261 Brassicaceae View MSA
123836656 5264 Brassicales-Malvales View MSA
124345629 5266 SBM View MSA
124251480 5268 Malvidae View MSA
124065792 5270 Rosid View MSA
123748183 5271 Pentapetalae View MSA
122794190 5272 Eudicot View MSA
122044026 5273 Angiosperm View MSA
121344650 5274 Embryophyte View MSA
123424100 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain