Gene : Cagra.0690s0012 C. grandiflora v1.1
Defline:  (1 of 2) 6.1.1.6 - Lysine--tRNA ligase / Lysyl-tRNA synthetase Genomic Order:  12
Name:  ? Cagra.0690s0012 Secondary Identifier:  ? PAC:28893798
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora TRNA-CHARGING-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0690s0012 0.5kb upstream 0.5kb upstream 4042 true Scaffold690: 62019-66060 Capsella grandiflora
Cagra.0690s0012 0.5kb upstream 0.5kb upstream 500 false Scaffold690: 62019-62518 Capsella grandiflora
Cagra.0690s0012 0.5kb downstream 0.5kb downstream 4042 true Scaffold690: 62519-66560 Capsella grandiflora
Cagra.0690s0012 0.5kb downstream 0.5kb downstream 500 false Scaffold690: 66061-66560 Capsella grandiflora
Cagra.0690s0012 1.0kb upstream 1.0kb upstream 4542 true Scaffold690: 61519-66060 Capsella grandiflora
Cagra.0690s0012 1.0kb upstream 1.0kb upstream 1000 false Scaffold690: 61519-62518 Capsella grandiflora
Cagra.0690s0012 1.0kb downstream 1.0kb downstream 4542 true Scaffold690: 62519-67060 Capsella grandiflora
Cagra.0690s0012 1.0kb downstream 1.0kb downstream 1000 false Scaffold690: 66061-67060 Capsella grandiflora
Cagra.0690s0012 2.0kb upstream 2.0kb upstream 5542 true Scaffold690: 60519-66060 Capsella grandiflora
Cagra.0690s0012 2.0kb upstream 2.0kb upstream 2000 false Scaffold690: 60519-62518 Capsella grandiflora
Cagra.0690s0012 2.0kb downstream 2.0kb downstream 5542 true Scaffold690: 62519-68060 Capsella grandiflora
Cagra.0690s0012 2.0kb downstream 2.0kb downstream 2000 false Scaffold690: 66061-68060 Capsella grandiflora
Cagra.0690s0012 5.0kb upstream 5.0kb upstream 8542 true Scaffold690: 57519-66060 Capsella grandiflora
Cagra.0690s0012 5.0kb upstream 5.0kb upstream 5000 false Scaffold690: 57519-62518 Capsella grandiflora
Cagra.0690s0012 5.0kb downstream 5.0kb downstream 8542 true Scaffold690: 62519-71060 Capsella grandiflora
Cagra.0690s0012 5.0kb downstream 5.0kb downstream 5000 false Scaffold690: 66061-71060 Capsella grandiflora
Cagra.0690s0012 10.0kb upstream 10.0kb upstream 13542 true Scaffold690: 52519-66060 Capsella grandiflora
Cagra.0690s0012 10.0kb upstream 10.0kb upstream 10000 false Scaffold690: 52519-62518 Capsella grandiflora
Cagra.0690s0012 10.0kb downstream 10.0kb downstream 13542 true Scaffold690: 62519-76060 Capsella grandiflora
Cagra.0690s0012 10.0kb downstream 10.0kb downstream 10000 false Scaffold690: 66061-76060 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363133 5261 Brassicaceae View MSA
123829318 5264 Brassicales-Malvales View MSA
124344689 5266 SBM View MSA
124239048 5268 Malvidae View MSA
124063653 5270 Rosid View MSA
123739204 5271 Pentapetalae View MSA
122788489 5272 Eudicot View MSA
122044302 5273 Angiosperm View MSA
121346599 5274 Embryophyte View MSA
123423817 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain