Gene : Cagra.0686s0022 C. grandiflora v1.1
Defline:  (1 of 4) PTHR10315:SF34 - E3 UBIQUITIN-PROTEIN LIGASE SINAT3-RELATED Genomic Order:  22
Name:  ? Cagra.0686s0022 Secondary Identifier:  ? PAC:28901018
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0686s0022 0.5kb upstream 0.5kb upstream 3617 true Scaffold686: 70499-74115 Capsella grandiflora
Cagra.0686s0022 0.5kb upstream 0.5kb upstream 500 false Scaffold686: 70499-70998 Capsella grandiflora
Cagra.0686s0022 0.5kb downstream 0.5kb downstream 3617 true Scaffold686: 70999-74615 Capsella grandiflora
Cagra.0686s0022 0.5kb downstream 0.5kb downstream 500 false Scaffold686: 74116-74615 Capsella grandiflora
Cagra.0686s0022 1.0kb upstream 1.0kb upstream 4117 true Scaffold686: 69999-74115 Capsella grandiflora
Cagra.0686s0022 1.0kb upstream 1.0kb upstream 1000 false Scaffold686: 69999-70998 Capsella grandiflora
Cagra.0686s0022 1.0kb downstream 1.0kb downstream 4117 true Scaffold686: 70999-75115 Capsella grandiflora
Cagra.0686s0022 1.0kb downstream 1.0kb downstream 1000 false Scaffold686: 74116-75115 Capsella grandiflora
Cagra.0686s0022 2.0kb upstream 2.0kb upstream 5117 true Scaffold686: 68999-74115 Capsella grandiflora
Cagra.0686s0022 2.0kb upstream 2.0kb upstream 2000 false Scaffold686: 68999-70998 Capsella grandiflora
Cagra.0686s0022 2.0kb downstream 2.0kb downstream 5117 true Scaffold686: 70999-76115 Capsella grandiflora
Cagra.0686s0022 2.0kb downstream 2.0kb downstream 2000 false Scaffold686: 74116-76115 Capsella grandiflora
Cagra.0686s0022 5.0kb upstream 5.0kb upstream 8117 true Scaffold686: 65999-74115 Capsella grandiflora
Cagra.0686s0022 5.0kb upstream 5.0kb upstream 5000 false Scaffold686: 65999-70998 Capsella grandiflora
Cagra.0686s0022 5.0kb downstream 5.0kb downstream 8117 true Scaffold686: 70999-79115 Capsella grandiflora
Cagra.0686s0022 5.0kb downstream 5.0kb downstream 5000 false Scaffold686: 74116-79115 Capsella grandiflora
Cagra.0686s0022 10.0kb upstream 10.0kb upstream 13117 true Scaffold686: 60999-74115 Capsella grandiflora
Cagra.0686s0022 10.0kb upstream 10.0kb upstream 10000 false Scaffold686: 60999-70998 Capsella grandiflora
Cagra.0686s0022 10.0kb downstream 10.0kb downstream 13117 true Scaffold686: 70999-84115 Capsella grandiflora
Cagra.0686s0022 10.0kb downstream 10.0kb downstream 10000 false Scaffold686: 74116-84115 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370268 5261 Brassicaceae View MSA
123840552 5264 Brassicales-Malvales View MSA
124344674 5266 SBM View MSA
124246222 5268 Malvidae View MSA
124072834 5270 Rosid View MSA
123746623 5271 Pentapetalae View MSA
122796827 5272 Eudicot View MSA
122050638 5273 Angiosperm View MSA
121350928 5274 Embryophyte View MSA
123381939 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain