Gene : Cagra.0686s0072 C. grandiflora v1.1
Defline:  (1 of 1) 1.1.1.86 - Ketol-acid reductoisomerase (NADP(+)) / Dihydroxyisovalerate dehydrogenase (isomerizing) Genomic Order:  72
Name:  ? Cagra.0686s0072 Secondary Identifier:  ? PAC:28901045
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora BRANCHED-CHAIN-AA-SYN-PWY Capsella grandiflora pathologic  
Cgrandiflora ILEUSYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-3001 Capsella grandiflora pathologic  
Cgrandiflora VALSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0686s0072 0.5kb upstream 0.5kb upstream 3574 true Scaffold686: 233571-237144 Capsella grandiflora
Cagra.0686s0072 0.5kb upstream 0.5kb upstream 500 false Scaffold686: 233571-234070 Capsella grandiflora
Cagra.0686s0072 0.5kb downstream 0.5kb downstream 3574 true Scaffold686: 234071-237644 Capsella grandiflora
Cagra.0686s0072 0.5kb downstream 0.5kb downstream 500 false Scaffold686: 237145-237644 Capsella grandiflora
Cagra.0686s0072 1.0kb upstream 1.0kb upstream 4074 true Scaffold686: 233071-237144 Capsella grandiflora
Cagra.0686s0072 1.0kb upstream 1.0kb upstream 1000 false Scaffold686: 233071-234070 Capsella grandiflora
Cagra.0686s0072 1.0kb downstream 1.0kb downstream 4074 true Scaffold686: 234071-238144 Capsella grandiflora
Cagra.0686s0072 1.0kb downstream 1.0kb downstream 1000 false Scaffold686: 237145-238144 Capsella grandiflora
Cagra.0686s0072 2.0kb upstream 2.0kb upstream 5074 true Scaffold686: 232071-237144 Capsella grandiflora
Cagra.0686s0072 2.0kb upstream 2.0kb upstream 2000 false Scaffold686: 232071-234070 Capsella grandiflora
Cagra.0686s0072 2.0kb downstream 2.0kb downstream 5074 true Scaffold686: 234071-239144 Capsella grandiflora
Cagra.0686s0072 2.0kb downstream 2.0kb downstream 2000 false Scaffold686: 237145-239144 Capsella grandiflora
Cagra.0686s0072 5.0kb upstream 5.0kb upstream 8074 true Scaffold686: 229071-237144 Capsella grandiflora
Cagra.0686s0072 5.0kb upstream 5.0kb upstream 5000 false Scaffold686: 229071-234070 Capsella grandiflora
Cagra.0686s0072 5.0kb downstream 5.0kb downstream 8074 true Scaffold686: 234071-242144 Capsella grandiflora
Cagra.0686s0072 5.0kb downstream 5.0kb downstream 5000 false Scaffold686: 237145-242144 Capsella grandiflora
Cagra.0686s0072 10.0kb upstream 10.0kb upstream 13074 true Scaffold686: 224071-237144 Capsella grandiflora
Cagra.0686s0072 10.0kb upstream 10.0kb upstream 10000 false Scaffold686: 224071-234070 Capsella grandiflora
Cagra.0686s0072 10.0kb downstream 10.0kb downstream 13074 true Scaffold686: 234071-247144 Capsella grandiflora
Cagra.0686s0072 10.0kb downstream 10.0kb downstream 10000 false Scaffold686: 237145-247144 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368423 5261 Brassicaceae View MSA
123828492 5264 Brassicales-Malvales View MSA
124339638 5266 SBM View MSA
124249053 5268 Malvidae View MSA
124060504 5270 Rosid View MSA
123749649 5271 Pentapetalae View MSA
122794973 5272 Eudicot View MSA
122043531 5273 Angiosperm View MSA
121344443 5274 Embryophyte View MSA
123428276 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain