Gene : Cagra.0888s0007 C. grandiflora v1.1
Defline:  (1 of 11) PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  7
Name:  ? Cagra.0888s0007 Secondary Identifier:  ? PAC:28909241
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0888s0007 0.5kb upstream 0.5kb upstream 2862 true Scaffold888: 27210-30071 Capsella grandiflora
Cagra.0888s0007 0.5kb upstream 0.5kb upstream 500 false Scaffold888: 27210-27709 Capsella grandiflora
Cagra.0888s0007 0.5kb downstream 0.5kb downstream 2862 true Scaffold888: 27710-30571 Capsella grandiflora
Cagra.0888s0007 0.5kb downstream 0.5kb downstream 500 false Scaffold888: 30072-30571 Capsella grandiflora
Cagra.0888s0007 1.0kb upstream 1.0kb upstream 3362 true Scaffold888: 26710-30071 Capsella grandiflora
Cagra.0888s0007 1.0kb upstream 1.0kb upstream 1000 false Scaffold888: 26710-27709 Capsella grandiflora
Cagra.0888s0007 1.0kb downstream 1.0kb downstream 3362 true Scaffold888: 27710-31071 Capsella grandiflora
Cagra.0888s0007 1.0kb downstream 1.0kb downstream 1000 false Scaffold888: 30072-31071 Capsella grandiflora
Cagra.0888s0007 2.0kb upstream 2.0kb upstream 4362 true Scaffold888: 25710-30071 Capsella grandiflora
Cagra.0888s0007 2.0kb upstream 2.0kb upstream 2000 false Scaffold888: 25710-27709 Capsella grandiflora
Cagra.0888s0007 2.0kb downstream 2.0kb downstream 4362 true Scaffold888: 27710-32071 Capsella grandiflora
Cagra.0888s0007 2.0kb downstream 2.0kb downstream 2000 false Scaffold888: 30072-32071 Capsella grandiflora
Cagra.0888s0007 5.0kb upstream 5.0kb upstream 7362 true Scaffold888: 22710-30071 Capsella grandiflora
Cagra.0888s0007 5.0kb upstream 5.0kb upstream 5000 false Scaffold888: 22710-27709 Capsella grandiflora
Cagra.0888s0007 5.0kb downstream 5.0kb downstream 7362 true Scaffold888: 27710-35071 Capsella grandiflora
Cagra.0888s0007 5.0kb downstream 5.0kb downstream 5000 false Scaffold888: 30072-35071 Capsella grandiflora
Cagra.0888s0007 10.0kb upstream 10.0kb upstream 12362 true Scaffold888: 17710-30071 Capsella grandiflora
Cagra.0888s0007 10.0kb upstream 10.0kb upstream 10000 false Scaffold888: 17710-27709 Capsella grandiflora
Cagra.0888s0007 10.0kb downstream 10.0kb downstream 12362 true Scaffold888: 27710-40071 Capsella grandiflora
Cagra.0888s0007 10.0kb downstream 10.0kb downstream 10000 false Scaffold888: 30072-40071 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026511 5273 Angiosperm View MSA
122374194 5261 Brassicaceae View MSA
123834262 5264 Brassicales-Malvales View MSA
124338680 5266 SBM View MSA
124237241 5268 Malvidae View MSA
124068989 5270 Rosid View MSA
123737329 5271 Pentapetalae View MSA
122785673 5272 Eudicot View MSA
121296362 5274 Embryophyte View MSA
123334541 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain