Gene : Cagra.0860s0018 C. grandiflora v1.1
Defline:  (1 of 2) PTHR23076:SF33 - ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED Genomic Order:  18
Name:  ? Cagra.0860s0018 Secondary Identifier:  ? PAC:28901402
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0860s0018 0.5kb upstream 0.5kb upstream 3288 true Scaffold860: 79684-82971 Capsella grandiflora
Cagra.0860s0018 0.5kb upstream 0.5kb upstream 500 false Scaffold860: 79684-80183 Capsella grandiflora
Cagra.0860s0018 0.5kb downstream 0.5kb downstream 3288 true Scaffold860: 80184-83471 Capsella grandiflora
Cagra.0860s0018 0.5kb downstream 0.5kb downstream 500 false Scaffold860: 82972-83471 Capsella grandiflora
Cagra.0860s0018 1.0kb upstream 1.0kb upstream 3788 true Scaffold860: 79184-82971 Capsella grandiflora
Cagra.0860s0018 1.0kb upstream 1.0kb upstream 1000 false Scaffold860: 79184-80183 Capsella grandiflora
Cagra.0860s0018 1.0kb downstream 1.0kb downstream 3788 true Scaffold860: 80184-83971 Capsella grandiflora
Cagra.0860s0018 1.0kb downstream 1.0kb downstream 1000 false Scaffold860: 82972-83971 Capsella grandiflora
Cagra.0860s0018 2.0kb upstream 2.0kb upstream 4788 true Scaffold860: 78184-82971 Capsella grandiflora
Cagra.0860s0018 2.0kb upstream 2.0kb upstream 2000 false Scaffold860: 78184-80183 Capsella grandiflora
Cagra.0860s0018 2.0kb downstream 2.0kb downstream 4788 true Scaffold860: 80184-84971 Capsella grandiflora
Cagra.0860s0018 2.0kb downstream 2.0kb downstream 2000 false Scaffold860: 82972-84971 Capsella grandiflora
Cagra.0860s0018 5.0kb upstream 5.0kb upstream 7788 true Scaffold860: 75184-82971 Capsella grandiflora
Cagra.0860s0018 5.0kb upstream 5.0kb upstream 5000 false Scaffold860: 75184-80183 Capsella grandiflora
Cagra.0860s0018 5.0kb downstream 5.0kb downstream 7788 true Scaffold860: 80184-87971 Capsella grandiflora
Cagra.0860s0018 5.0kb downstream 5.0kb downstream 5000 false Scaffold860: 82972-87971 Capsella grandiflora
Cagra.0860s0018 10.0kb upstream 10.0kb upstream 12788 true Scaffold860: 70184-82971 Capsella grandiflora
Cagra.0860s0018 10.0kb upstream 10.0kb upstream 10000 false Scaffold860: 70184-80183 Capsella grandiflora
Cagra.0860s0018 10.0kb downstream 10.0kb downstream 12788 true Scaffold860: 80184-92971 Capsella grandiflora
Cagra.0860s0018 10.0kb downstream 10.0kb downstream 10000 false Scaffold860: 82972-92971 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360689 5261 Brassicaceae View MSA
123838553 5264 Brassicales-Malvales View MSA
124337875 5266 SBM View MSA
124238414 5268 Malvidae View MSA
124060614 5270 Rosid View MSA
123737451 5271 Pentapetalae View MSA
122792150 5272 Eudicot View MSA
122046642 5273 Angiosperm View MSA
121346512 5274 Embryophyte View MSA
123425128 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain