Gene : Cagra.0860s0025 C. grandiflora v1.1
Defline:  (1 of 3) 6.1.1.4 - Leucine--tRNA ligase / Leucyl-tRNA synthetase Genomic Order:  25
Name:  ? Cagra.0860s0025 Secondary Identifier:  ? PAC:28901409
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora TRNA-CHARGING-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0860s0025 0.5kb upstream 0.5kb upstream 4240 true Scaffold860: 119621-123860 Capsella grandiflora
Cagra.0860s0025 0.5kb upstream 0.5kb upstream 500 false Scaffold860: 123361-123860 Capsella grandiflora
Cagra.0860s0025 0.5kb downstream 0.5kb downstream 4240 true Scaffold860: 119121-123360 Capsella grandiflora
Cagra.0860s0025 0.5kb downstream 0.5kb downstream 500 false Scaffold860: 119121-119620 Capsella grandiflora
Cagra.0860s0025 1.0kb upstream 1.0kb upstream 4740 true Scaffold860: 119621-124360 Capsella grandiflora
Cagra.0860s0025 1.0kb upstream 1.0kb upstream 1000 false Scaffold860: 123361-124360 Capsella grandiflora
Cagra.0860s0025 1.0kb downstream 1.0kb downstream 4740 true Scaffold860: 118621-123360 Capsella grandiflora
Cagra.0860s0025 1.0kb downstream 1.0kb downstream 1000 false Scaffold860: 118621-119620 Capsella grandiflora
Cagra.0860s0025 2.0kb upstream 2.0kb upstream 5740 true Scaffold860: 119621-125360 Capsella grandiflora
Cagra.0860s0025 2.0kb upstream 2.0kb upstream 2000 false Scaffold860: 123361-125360 Capsella grandiflora
Cagra.0860s0025 2.0kb downstream 2.0kb downstream 5740 true Scaffold860: 117621-123360 Capsella grandiflora
Cagra.0860s0025 2.0kb downstream 2.0kb downstream 2000 false Scaffold860: 117621-119620 Capsella grandiflora
Cagra.0860s0025 5.0kb upstream 5.0kb upstream 8740 true Scaffold860: 119621-128360 Capsella grandiflora
Cagra.0860s0025 5.0kb upstream 5.0kb upstream 5000 false Scaffold860: 123361-128360 Capsella grandiflora
Cagra.0860s0025 5.0kb downstream 5.0kb downstream 8740 true Scaffold860: 114621-123360 Capsella grandiflora
Cagra.0860s0025 5.0kb downstream 5.0kb downstream 5000 false Scaffold860: 114621-119620 Capsella grandiflora
Cagra.0860s0025 10.0kb upstream 10.0kb upstream 13740 true Scaffold860: 119621-133360 Capsella grandiflora
Cagra.0860s0025 10.0kb upstream 10.0kb upstream 10000 false Scaffold860: 123361-133360 Capsella grandiflora
Cagra.0860s0025 10.0kb downstream 10.0kb downstream 13740 true Scaffold860: 109621-123360 Capsella grandiflora
Cagra.0860s0025 10.0kb downstream 10.0kb downstream 10000 false Scaffold860: 109621-119620 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122337492 5261 Brassicaceae View MSA
123778141 5264 Brassicales-Malvales View MSA
124276493 5266 SBM View MSA
124131767 5268 Malvidae View MSA
124066090 5270 Rosid View MSA
123749882 5271 Pentapetalae View MSA
122789988 5272 Eudicot View MSA
122047618 5273 Angiosperm View MSA
121344832 5274 Embryophyte View MSA
123424388 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain