Gene : Cagra.0844s0011 C. grandiflora v1.1
Defline:  (1 of 2) 1.5.1.8 - Saccharopine dehydrogenase (NADP(+), L-lysine-forming) / Lysine-ketoglutarate reductase Genomic Order:  11
Name:  ? Cagra.0844s0011 Secondary Identifier:  ? PAC:28914900
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora LYSINE-DEG1-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0844s0011 0.5kb upstream 0.5kb upstream 5192 true Scaffold844: 39383-44574 Capsella grandiflora
Cagra.0844s0011 0.5kb upstream 0.5kb upstream 500 false Scaffold844: 44075-44574 Capsella grandiflora
Cagra.0844s0011 0.5kb downstream 0.5kb downstream 5192 true Scaffold844: 38883-44074 Capsella grandiflora
Cagra.0844s0011 0.5kb downstream 0.5kb downstream 500 false Scaffold844: 38883-39382 Capsella grandiflora
Cagra.0844s0011 1.0kb upstream 1.0kb upstream 5692 true Scaffold844: 39383-45074 Capsella grandiflora
Cagra.0844s0011 1.0kb upstream 1.0kb upstream 1000 false Scaffold844: 44075-45074 Capsella grandiflora
Cagra.0844s0011 1.0kb downstream 1.0kb downstream 5692 true Scaffold844: 38383-44074 Capsella grandiflora
Cagra.0844s0011 1.0kb downstream 1.0kb downstream 1000 false Scaffold844: 38383-39382 Capsella grandiflora
Cagra.0844s0011 2.0kb upstream 2.0kb upstream 6692 true Scaffold844: 39383-46074 Capsella grandiflora
Cagra.0844s0011 2.0kb upstream 2.0kb upstream 2000 false Scaffold844: 44075-46074 Capsella grandiflora
Cagra.0844s0011 2.0kb downstream 2.0kb downstream 6692 true Scaffold844: 37383-44074 Capsella grandiflora
Cagra.0844s0011 2.0kb downstream 2.0kb downstream 2000 false Scaffold844: 37383-39382 Capsella grandiflora
Cagra.0844s0011 5.0kb upstream 5.0kb upstream 9692 true Scaffold844: 39383-49074 Capsella grandiflora
Cagra.0844s0011 5.0kb upstream 5.0kb upstream 5000 false Scaffold844: 44075-49074 Capsella grandiflora
Cagra.0844s0011 5.0kb downstream 5.0kb downstream 9692 true Scaffold844: 34383-44074 Capsella grandiflora
Cagra.0844s0011 5.0kb downstream 5.0kb downstream 5000 false Scaffold844: 34383-39382 Capsella grandiflora
Cagra.0844s0011 10.0kb upstream 10.0kb upstream 14692 true Scaffold844: 39383-54074 Capsella grandiflora
Cagra.0844s0011 10.0kb upstream 10.0kb upstream 10000 false Scaffold844: 44075-54074 Capsella grandiflora
Cagra.0844s0011 10.0kb downstream 10.0kb downstream 14692 true Scaffold844: 29383-44074 Capsella grandiflora
Cagra.0844s0011 10.0kb downstream 10.0kb downstream 10000 false Scaffold844: 29383-39382 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122334402 5261 Brassicaceae Singleton cluster - no MSA
123837838 5264 Brassicales-Malvales View MSA
124346514 5266 SBM View MSA
124249986 5268 Malvidae View MSA
124068901 5270 Rosid View MSA
123736723 5271 Pentapetalae View MSA
122787907 5272 Eudicot View MSA
122047432 5273 Angiosperm View MSA
121344808 5274 Embryophyte View MSA
123380103 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain