Gene : Cagra.0834s0044 C. grandiflora v1.1
Defline:  (1 of 1) PTHR10742:SF260 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 Genomic Order:  44
Name:  ? Cagra.0834s0044 Secondary Identifier:  ? PAC:28903765
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-6441 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0834s0044 0.5kb upstream 0.5kb upstream 3996 true Scaffold834: 151790-155785 Capsella grandiflora
Cagra.0834s0044 0.5kb upstream 0.5kb upstream 500 false Scaffold834: 155286-155785 Capsella grandiflora
Cagra.0834s0044 0.5kb downstream 0.5kb downstream 3996 true Scaffold834: 151290-155285 Capsella grandiflora
Cagra.0834s0044 0.5kb downstream 0.5kb downstream 500 false Scaffold834: 151290-151789 Capsella grandiflora
Cagra.0834s0044 1.0kb upstream 1.0kb upstream 4496 true Scaffold834: 151790-156285 Capsella grandiflora
Cagra.0834s0044 1.0kb upstream 1.0kb upstream 1000 false Scaffold834: 155286-156285 Capsella grandiflora
Cagra.0834s0044 1.0kb downstream 1.0kb downstream 4496 true Scaffold834: 150790-155285 Capsella grandiflora
Cagra.0834s0044 1.0kb downstream 1.0kb downstream 1000 false Scaffold834: 150790-151789 Capsella grandiflora
Cagra.0834s0044 2.0kb upstream 2.0kb upstream 5496 true Scaffold834: 151790-157285 Capsella grandiflora
Cagra.0834s0044 2.0kb upstream 2.0kb upstream 2000 false Scaffold834: 155286-157285 Capsella grandiflora
Cagra.0834s0044 2.0kb downstream 2.0kb downstream 5496 true Scaffold834: 149790-155285 Capsella grandiflora
Cagra.0834s0044 2.0kb downstream 2.0kb downstream 2000 false Scaffold834: 149790-151789 Capsella grandiflora
Cagra.0834s0044 5.0kb upstream 5.0kb upstream 8496 true Scaffold834: 151790-160285 Capsella grandiflora
Cagra.0834s0044 5.0kb upstream 5.0kb upstream 5000 false Scaffold834: 155286-160285 Capsella grandiflora
Cagra.0834s0044 5.0kb downstream 5.0kb downstream 8496 true Scaffold834: 146790-155285 Capsella grandiflora
Cagra.0834s0044 5.0kb downstream 5.0kb downstream 5000 false Scaffold834: 146790-151789 Capsella grandiflora
Cagra.0834s0044 10.0kb upstream 10.0kb upstream 13496 true Scaffold834: 151790-165285 Capsella grandiflora
Cagra.0834s0044 10.0kb upstream 10.0kb upstream 10000 false Scaffold834: 155286-165285 Capsella grandiflora
Cagra.0834s0044 10.0kb downstream 10.0kb downstream 13496 true Scaffold834: 141790-155285 Capsella grandiflora
Cagra.0834s0044 10.0kb downstream 10.0kb downstream 10000 false Scaffold834: 141790-151789 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362933 5261 Brassicaceae View MSA
123830834 5264 Brassicales-Malvales View MSA
124341216 5266 SBM View MSA
124237182 5268 Malvidae View MSA
124068541 5270 Rosid View MSA
123736657 5271 Pentapetalae View MSA
122791898 5272 Eudicot View MSA
122046966 5273 Angiosperm View MSA
121350960 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain