Gene : Cagra.0824s0101 C. grandiflora v1.1
Defline:  (1 of 8) PF01966 - HD domain (HD) Genomic Order:  101
Name:  ? Cagra.0824s0101 Secondary Identifier:  ? PAC:28899987
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0824s0101 0.5kb upstream 0.5kb upstream 2572 true Scaffold824: 343472-346043 Capsella grandiflora
Cagra.0824s0101 0.5kb upstream 0.5kb upstream 500 false Scaffold824: 343472-343971 Capsella grandiflora
Cagra.0824s0101 0.5kb downstream 0.5kb downstream 2572 true Scaffold824: 343972-346543 Capsella grandiflora
Cagra.0824s0101 0.5kb downstream 0.5kb downstream 500 false Scaffold824: 346044-346543 Capsella grandiflora
Cagra.0824s0101 1.0kb upstream 1.0kb upstream 3072 true Scaffold824: 342972-346043 Capsella grandiflora
Cagra.0824s0101 1.0kb upstream 1.0kb upstream 1000 false Scaffold824: 342972-343971 Capsella grandiflora
Cagra.0824s0101 1.0kb downstream 1.0kb downstream 3072 true Scaffold824: 343972-347043 Capsella grandiflora
Cagra.0824s0101 1.0kb downstream 1.0kb downstream 1000 false Scaffold824: 346044-347043 Capsella grandiflora
Cagra.0824s0101 2.0kb upstream 2.0kb upstream 4072 true Scaffold824: 341972-346043 Capsella grandiflora
Cagra.0824s0101 2.0kb upstream 2.0kb upstream 2000 false Scaffold824: 341972-343971 Capsella grandiflora
Cagra.0824s0101 2.0kb downstream 2.0kb downstream 4072 true Scaffold824: 343972-348043 Capsella grandiflora
Cagra.0824s0101 2.0kb downstream 2.0kb downstream 2000 false Scaffold824: 346044-348043 Capsella grandiflora
Cagra.0824s0101 5.0kb upstream 5.0kb upstream 7072 true Scaffold824: 338972-346043 Capsella grandiflora
Cagra.0824s0101 5.0kb upstream 5.0kb upstream 5000 false Scaffold824: 338972-343971 Capsella grandiflora
Cagra.0824s0101 5.0kb downstream 5.0kb downstream 7072 true Scaffold824: 343972-351043 Capsella grandiflora
Cagra.0824s0101 5.0kb downstream 5.0kb downstream 5000 false Scaffold824: 346044-351043 Capsella grandiflora
Cagra.0824s0101 10.0kb upstream 10.0kb upstream 12072 true Scaffold824: 333972-346043 Capsella grandiflora
Cagra.0824s0101 10.0kb upstream 10.0kb upstream 10000 false Scaffold824: 333972-343971 Capsella grandiflora
Cagra.0824s0101 10.0kb downstream 10.0kb downstream 12072 true Scaffold824: 343972-356043 Capsella grandiflora
Cagra.0824s0101 10.0kb downstream 10.0kb downstream 10000 false Scaffold824: 346044-356043 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366575 5261 Brassicaceae View MSA
123830554 5264 Brassicales-Malvales View MSA
124342124 5266 SBM View MSA
124238033 5268 Malvidae View MSA
124068985 5270 Rosid View MSA
123739075 5271 Pentapetalae View MSA
122790002 5272 Eudicot View MSA
122047991 5273 Angiosperm View MSA
121346124 5274 Embryophyte View MSA
123423985 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain