Gene : Cagra.0824s0002 C. grandiflora v1.1
Defline:  (1 of 2) PTHR10836//PTHR10836:SF46 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE Genomic Order:  2
Name:  ? Cagra.0824s0002 Secondary Identifier:  ? PAC:28900003
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora ANAEROFRUCAT-PWY Capsella grandiflora pathologic  
Cgrandiflora ANAGLYCOLYSIS-PWY Capsella grandiflora pathologic  
Cgrandiflora GLUCONEO-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-1042 Capsella grandiflora pathologic  
Cgrandiflora PWY-5464 Capsella grandiflora pathologic  
Cgrandiflora PWY66-399 Capsella grandiflora pathologic  
Cgrandiflora SUCSYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0824s0002 0.5kb upstream 0.5kb upstream 3827 true Scaffold824: 3823-7649 Capsella grandiflora
Cagra.0824s0002 0.5kb upstream 0.5kb upstream 500 false Scaffold824: 3823-4322 Capsella grandiflora
Cagra.0824s0002 0.5kb downstream 0.5kb downstream 3827 true Scaffold824: 4323-8149 Capsella grandiflora
Cagra.0824s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold824: 7650-8149 Capsella grandiflora
Cagra.0824s0002 1.0kb upstream 1.0kb upstream 4327 true Scaffold824: 3323-7649 Capsella grandiflora
Cagra.0824s0002 1.0kb upstream 1.0kb upstream 1000 false Scaffold824: 3323-4322 Capsella grandiflora
Cagra.0824s0002 1.0kb downstream 1.0kb downstream 4327 true Scaffold824: 4323-8649 Capsella grandiflora
Cagra.0824s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold824: 7650-8649 Capsella grandiflora
Cagra.0824s0002 2.0kb upstream 2.0kb upstream 5327 true Scaffold824: 2323-7649 Capsella grandiflora
Cagra.0824s0002 2.0kb upstream 2.0kb upstream 2000 false Scaffold824: 2323-4322 Capsella grandiflora
Cagra.0824s0002 2.0kb downstream 2.0kb downstream 5327 true Scaffold824: 4323-9649 Capsella grandiflora
Cagra.0824s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold824: 7650-9649 Capsella grandiflora
Cagra.0824s0002 5.0kb upstream 5.0kb upstream 7649 true Scaffold824: 1-7649 Capsella grandiflora
Cagra.0824s0002 5.0kb upstream 5.0kb upstream 4322 false Scaffold824: 1-4322 Capsella grandiflora
Cagra.0824s0002 5.0kb downstream 5.0kb downstream 8327 true Scaffold824: 4323-12649 Capsella grandiflora
Cagra.0824s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold824: 7650-12649 Capsella grandiflora
Cagra.0824s0002 10.0kb upstream 10.0kb upstream 7649 true Scaffold824: 1-7649 Capsella grandiflora
Cagra.0824s0002 10.0kb upstream 10.0kb upstream 4322 false Scaffold824: 1-4322 Capsella grandiflora
Cagra.0824s0002 10.0kb downstream 10.0kb downstream 13327 true Scaffold824: 4323-17649 Capsella grandiflora
Cagra.0824s0002 10.0kb downstream 10.0kb downstream 10000 false Scaffold824: 7650-17649 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374998 5261 Brassicaceae View MSA
123836882 5264 Brassicales-Malvales View MSA
124346127 5266 SBM View MSA
124243370 5268 Malvidae View MSA
124063810 5270 Rosid View MSA
123738168 5271 Pentapetalae View MSA
122792653 5272 Eudicot View MSA
122042179 5273 Angiosperm View MSA
121345581 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain