Gene : Cagra.0804s0006 C. grandiflora v1.1
Defline:  (1 of 2) PTHR23205 - SPLICING FACTOR 3A SUBUNIT 2 Genomic Order:  6
Name:  ? Cagra.0804s0006 Secondary Identifier:  ? PAC:28907179
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0804s0006 0.5kb upstream 0.5kb upstream 2632 true Scaffold804: 25407-28038 Capsella grandiflora
Cagra.0804s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold804: 27539-28038 Capsella grandiflora
Cagra.0804s0006 0.5kb downstream 0.5kb downstream 2632 true Scaffold804: 24907-27538 Capsella grandiflora
Cagra.0804s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold804: 24907-25406 Capsella grandiflora
Cagra.0804s0006 1.0kb upstream 1.0kb upstream 3132 true Scaffold804: 25407-28538 Capsella grandiflora
Cagra.0804s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold804: 27539-28538 Capsella grandiflora
Cagra.0804s0006 1.0kb downstream 1.0kb downstream 3132 true Scaffold804: 24407-27538 Capsella grandiflora
Cagra.0804s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold804: 24407-25406 Capsella grandiflora
Cagra.0804s0006 2.0kb upstream 2.0kb upstream 4132 true Scaffold804: 25407-29538 Capsella grandiflora
Cagra.0804s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold804: 27539-29538 Capsella grandiflora
Cagra.0804s0006 2.0kb downstream 2.0kb downstream 4132 true Scaffold804: 23407-27538 Capsella grandiflora
Cagra.0804s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold804: 23407-25406 Capsella grandiflora
Cagra.0804s0006 5.0kb upstream 5.0kb upstream 7132 true Scaffold804: 25407-32538 Capsella grandiflora
Cagra.0804s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold804: 27539-32538 Capsella grandiflora
Cagra.0804s0006 5.0kb downstream 5.0kb downstream 7132 true Scaffold804: 20407-27538 Capsella grandiflora
Cagra.0804s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold804: 20407-25406 Capsella grandiflora
Cagra.0804s0006 10.0kb upstream 10.0kb upstream 12132 true Scaffold804: 25407-37538 Capsella grandiflora
Cagra.0804s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold804: 27539-37538 Capsella grandiflora
Cagra.0804s0006 10.0kb downstream 10.0kb downstream 12132 true Scaffold804: 15407-27538 Capsella grandiflora
Cagra.0804s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold804: 15407-25406 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360573 5261 Brassicaceae View MSA
123827588 5264 Brassicales-Malvales View MSA
124345953 5266 SBM View MSA
124243673 5268 Malvidae View MSA
124064225 5270 Rosid View MSA
123745899 5271 Pentapetalae View MSA
122793816 5272 Eudicot View MSA
122043873 5273 Angiosperm View MSA
121344235 5274 Embryophyte View MSA
123425065 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain