Gene : Cagra.0812s0019 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11941:SF61 - PROTEIN ECH-5 Genomic Order:  19
Name:  ? Cagra.0812s0019 Secondary Identifier:  ? PAC:28919364
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora LEU-DEG2-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0812s0019 0.5kb upstream 0.5kb upstream 3200 true Scaffold812: 76044-79243 Capsella grandiflora
Cagra.0812s0019 0.5kb upstream 0.5kb upstream 500 false Scaffold812: 76044-76543 Capsella grandiflora
Cagra.0812s0019 0.5kb downstream 0.5kb downstream 3200 true Scaffold812: 76544-79743 Capsella grandiflora
Cagra.0812s0019 0.5kb downstream 0.5kb downstream 500 false Scaffold812: 79244-79743 Capsella grandiflora
Cagra.0812s0019 1.0kb upstream 1.0kb upstream 3700 true Scaffold812: 75544-79243 Capsella grandiflora
Cagra.0812s0019 1.0kb upstream 1.0kb upstream 1000 false Scaffold812: 75544-76543 Capsella grandiflora
Cagra.0812s0019 1.0kb downstream 1.0kb downstream 3700 true Scaffold812: 76544-80243 Capsella grandiflora
Cagra.0812s0019 1.0kb downstream 1.0kb downstream 1000 false Scaffold812: 79244-80243 Capsella grandiflora
Cagra.0812s0019 2.0kb upstream 2.0kb upstream 4700 true Scaffold812: 74544-79243 Capsella grandiflora
Cagra.0812s0019 2.0kb upstream 2.0kb upstream 2000 false Scaffold812: 74544-76543 Capsella grandiflora
Cagra.0812s0019 2.0kb downstream 2.0kb downstream 4700 true Scaffold812: 76544-81243 Capsella grandiflora
Cagra.0812s0019 2.0kb downstream 2.0kb downstream 2000 false Scaffold812: 79244-81243 Capsella grandiflora
Cagra.0812s0019 5.0kb upstream 5.0kb upstream 7700 true Scaffold812: 71544-79243 Capsella grandiflora
Cagra.0812s0019 5.0kb upstream 5.0kb upstream 5000 false Scaffold812: 71544-76543 Capsella grandiflora
Cagra.0812s0019 5.0kb downstream 5.0kb downstream 7700 true Scaffold812: 76544-84243 Capsella grandiflora
Cagra.0812s0019 5.0kb downstream 5.0kb downstream 5000 false Scaffold812: 79244-84243 Capsella grandiflora
Cagra.0812s0019 10.0kb upstream 10.0kb upstream 12700 true Scaffold812: 66544-79243 Capsella grandiflora
Cagra.0812s0019 10.0kb upstream 10.0kb upstream 10000 false Scaffold812: 66544-76543 Capsella grandiflora
Cagra.0812s0019 10.0kb downstream 10.0kb downstream 12700 true Scaffold812: 76544-89243 Capsella grandiflora
Cagra.0812s0019 10.0kb downstream 10.0kb downstream 10000 false Scaffold812: 79244-89243 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365847 5261 Brassicaceae View MSA
123834998 5264 Brassicales-Malvales View MSA
124321989 5266 SBM View MSA
124240745 5268 Malvidae View MSA
124069005 5270 Rosid View MSA
123739015 5271 Pentapetalae View MSA
122790936 5272 Eudicot View MSA
122045797 5273 Angiosperm View MSA
121351751 5274 Embryophyte View MSA
123427880 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain