Gene : Cagra.1004s0004 C. grandiflora v1.1
Defline:  (1 of 2) PTHR31235:SF9 - PEROXIDASE 18-RELATED Genomic Order:  4
Name:  ? Cagra.1004s0004 Secondary Identifier:  ? PAC:28896529
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5466 Capsella grandiflora pathologic  
Cgrandiflora PWY-7214 Capsella grandiflora pathologic  
Cgrandiflora PWY-7445 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1004s0004 0.5kb upstream 0.5kb upstream 1792 true Scaffold1004: 15878-17669 Capsella grandiflora
Cagra.1004s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold1004: 17170-17669 Capsella grandiflora
Cagra.1004s0004 0.5kb downstream 0.5kb downstream 1792 true Scaffold1004: 15378-17169 Capsella grandiflora
Cagra.1004s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold1004: 15378-15877 Capsella grandiflora
Cagra.1004s0004 1.0kb upstream 1.0kb upstream 2292 true Scaffold1004: 15878-18169 Capsella grandiflora
Cagra.1004s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold1004: 17170-18169 Capsella grandiflora
Cagra.1004s0004 1.0kb downstream 1.0kb downstream 2292 true Scaffold1004: 14878-17169 Capsella grandiflora
Cagra.1004s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold1004: 14878-15877 Capsella grandiflora
Cagra.1004s0004 2.0kb upstream 2.0kb upstream 3292 true Scaffold1004: 15878-19169 Capsella grandiflora
Cagra.1004s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold1004: 17170-19169 Capsella grandiflora
Cagra.1004s0004 2.0kb downstream 2.0kb downstream 3292 true Scaffold1004: 13878-17169 Capsella grandiflora
Cagra.1004s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold1004: 13878-15877 Capsella grandiflora
Cagra.1004s0004 5.0kb upstream 5.0kb upstream 6292 true Scaffold1004: 15878-22169 Capsella grandiflora
Cagra.1004s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold1004: 17170-22169 Capsella grandiflora
Cagra.1004s0004 5.0kb downstream 5.0kb downstream 6292 true Scaffold1004: 10878-17169 Capsella grandiflora
Cagra.1004s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold1004: 10878-15877 Capsella grandiflora
Cagra.1004s0004 10.0kb upstream 10.0kb upstream 11292 true Scaffold1004: 15878-27169 Capsella grandiflora
Cagra.1004s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold1004: 17170-27169 Capsella grandiflora
Cagra.1004s0004 10.0kb downstream 10.0kb downstream 11292 true Scaffold1004: 5878-17169 Capsella grandiflora
Cagra.1004s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold1004: 5878-15877 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040962 5273 Angiosperm View MSA
122372789 5261 Brassicaceae View MSA
123836706 5264 Brassicales-Malvales View MSA
124340005 5266 SBM View MSA
124237745 5268 Malvidae View MSA
124067094 5270 Rosid View MSA
123737779 5271 Pentapetalae View MSA
122790271 5272 Eudicot View MSA
121351674 5274 Embryophyte View MSA
123426672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain