Gene : Cagra.0993s0048 C. grandiflora v1.1
Defline:  (1 of 2) PTHR10210:SF54 - RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1, CHLOROPLASTIC-RELATED Genomic Order:  48
Name:  ? Cagra.0993s0048 Secondary Identifier:  ? PAC:28903453
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY0-662 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0993s0048 0.5kb upstream 0.5kb upstream 3034 true Scaffold993: 158893-161926 Capsella grandiflora
Cagra.0993s0048 0.5kb upstream 0.5kb upstream 500 false Scaffold993: 161427-161926 Capsella grandiflora
Cagra.0993s0048 0.5kb downstream 0.5kb downstream 3034 true Scaffold993: 158393-161426 Capsella grandiflora
Cagra.0993s0048 0.5kb downstream 0.5kb downstream 500 false Scaffold993: 158393-158892 Capsella grandiflora
Cagra.0993s0048 1.0kb upstream 1.0kb upstream 3534 true Scaffold993: 158893-162426 Capsella grandiflora
Cagra.0993s0048 1.0kb upstream 1.0kb upstream 1000 false Scaffold993: 161427-162426 Capsella grandiflora
Cagra.0993s0048 1.0kb downstream 1.0kb downstream 3534 true Scaffold993: 157893-161426 Capsella grandiflora
Cagra.0993s0048 1.0kb downstream 1.0kb downstream 1000 false Scaffold993: 157893-158892 Capsella grandiflora
Cagra.0993s0048 2.0kb upstream 2.0kb upstream 4534 true Scaffold993: 158893-163426 Capsella grandiflora
Cagra.0993s0048 2.0kb upstream 2.0kb upstream 2000 false Scaffold993: 161427-163426 Capsella grandiflora
Cagra.0993s0048 2.0kb downstream 2.0kb downstream 4534 true Scaffold993: 156893-161426 Capsella grandiflora
Cagra.0993s0048 2.0kb downstream 2.0kb downstream 2000 false Scaffold993: 156893-158892 Capsella grandiflora
Cagra.0993s0048 5.0kb upstream 5.0kb upstream 7534 true Scaffold993: 158893-166426 Capsella grandiflora
Cagra.0993s0048 5.0kb upstream 5.0kb upstream 5000 false Scaffold993: 161427-166426 Capsella grandiflora
Cagra.0993s0048 5.0kb downstream 5.0kb downstream 7534 true Scaffold993: 153893-161426 Capsella grandiflora
Cagra.0993s0048 5.0kb downstream 5.0kb downstream 5000 false Scaffold993: 153893-158892 Capsella grandiflora
Cagra.0993s0048 10.0kb upstream 10.0kb upstream 12534 true Scaffold993: 158893-171426 Capsella grandiflora
Cagra.0993s0048 10.0kb upstream 10.0kb upstream 10000 false Scaffold993: 161427-171426 Capsella grandiflora
Cagra.0993s0048 10.0kb downstream 10.0kb downstream 12534 true Scaffold993: 148893-161426 Capsella grandiflora
Cagra.0993s0048 10.0kb downstream 10.0kb downstream 10000 false Scaffold993: 148893-158892 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371418 5261 Brassicaceae View MSA
123839095 5264 Brassicales-Malvales View MSA
124346548 5266 SBM View MSA
124240392 5268 Malvidae View MSA
124060795 5270 Rosid View MSA
123749025 5271 Pentapetalae View MSA
122788028 5272 Eudicot View MSA
122042217 5273 Angiosperm View MSA
121347994 5274 Embryophyte View MSA
123427852 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain