Gene : Cagra.0926s0004 C. grandiflora v1.1
Defline:  (1 of 1) PTHR16166//PTHR16166:SF98 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 Genomic Order:  4
Name:  ? Cagra.0926s0004 Secondary Identifier:  ? PAC:28911442
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0926s0004 0.5kb upstream 0.5kb upstream 14722 true Scaffold926: 11680-26401 Capsella grandiflora
Cagra.0926s0004 0.5kb upstream 0.5kb upstream 500 false Scaffold926: 25902-26401 Capsella grandiflora
Cagra.0926s0004 0.5kb downstream 0.5kb downstream 14722 true Scaffold926: 11180-25901 Capsella grandiflora
Cagra.0926s0004 0.5kb downstream 0.5kb downstream 500 false Scaffold926: 11180-11679 Capsella grandiflora
Cagra.0926s0004 1.0kb upstream 1.0kb upstream 15222 true Scaffold926: 11680-26901 Capsella grandiflora
Cagra.0926s0004 1.0kb upstream 1.0kb upstream 1000 false Scaffold926: 25902-26901 Capsella grandiflora
Cagra.0926s0004 1.0kb downstream 1.0kb downstream 15222 true Scaffold926: 10680-25901 Capsella grandiflora
Cagra.0926s0004 1.0kb downstream 1.0kb downstream 1000 false Scaffold926: 10680-11679 Capsella grandiflora
Cagra.0926s0004 2.0kb upstream 2.0kb upstream 16222 true Scaffold926: 11680-27901 Capsella grandiflora
Cagra.0926s0004 2.0kb upstream 2.0kb upstream 2000 false Scaffold926: 25902-27901 Capsella grandiflora
Cagra.0926s0004 2.0kb downstream 2.0kb downstream 16222 true Scaffold926: 9680-25901 Capsella grandiflora
Cagra.0926s0004 2.0kb downstream 2.0kb downstream 2000 false Scaffold926: 9680-11679 Capsella grandiflora
Cagra.0926s0004 5.0kb upstream 5.0kb upstream 19222 true Scaffold926: 11680-30901 Capsella grandiflora
Cagra.0926s0004 5.0kb upstream 5.0kb upstream 5000 false Scaffold926: 25902-30901 Capsella grandiflora
Cagra.0926s0004 5.0kb downstream 5.0kb downstream 19222 true Scaffold926: 6680-25901 Capsella grandiflora
Cagra.0926s0004 5.0kb downstream 5.0kb downstream 5000 false Scaffold926: 6680-11679 Capsella grandiflora
Cagra.0926s0004 10.0kb upstream 10.0kb upstream 24222 true Scaffold926: 11680-35901 Capsella grandiflora
Cagra.0926s0004 10.0kb upstream 10.0kb upstream 10000 false Scaffold926: 25902-35901 Capsella grandiflora
Cagra.0926s0004 10.0kb downstream 10.0kb downstream 24222 true Scaffold926: 1680-25901 Capsella grandiflora
Cagra.0926s0004 10.0kb downstream 10.0kb downstream 10000 false Scaffold926: 1680-11679 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360388 5261 Brassicaceae View MSA
123830490 5264 Brassicales-Malvales View MSA
124337349 5266 SBM View MSA
124238186 5268 Malvidae View MSA
124073517 5270 Rosid View MSA
123745544 5271 Pentapetalae View MSA
122793580 5272 Eudicot View MSA
122042840 5273 Angiosperm View MSA
121343832 5274 Embryophyte View MSA
123379927 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain