Gene : Cagra.0917s0010 C. grandiflora v1.1
Defline:  (1 of 2) 1.2.4.2 - Oxoglutarate dehydrogenase (succinyl-transferring) / Oxoglutarate dehydrogenase (lipoamide) Genomic Order:  10
Name:  ? Cagra.0917s0010 Secondary Identifier:  ? PAC:28909356
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5084 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0917s0010 0.5kb upstream 0.5kb upstream 4560 true Scaffold917: 40728-45287 Capsella grandiflora
Cagra.0917s0010 0.5kb upstream 0.5kb upstream 500 false Scaffold917: 44788-45287 Capsella grandiflora
Cagra.0917s0010 0.5kb downstream 0.5kb downstream 4560 true Scaffold917: 40228-44787 Capsella grandiflora
Cagra.0917s0010 0.5kb downstream 0.5kb downstream 500 false Scaffold917: 40228-40727 Capsella grandiflora
Cagra.0917s0010 1.0kb upstream 1.0kb upstream 5060 true Scaffold917: 40728-45787 Capsella grandiflora
Cagra.0917s0010 1.0kb upstream 1.0kb upstream 1000 false Scaffold917: 44788-45787 Capsella grandiflora
Cagra.0917s0010 1.0kb downstream 1.0kb downstream 5060 true Scaffold917: 39728-44787 Capsella grandiflora
Cagra.0917s0010 1.0kb downstream 1.0kb downstream 1000 false Scaffold917: 39728-40727 Capsella grandiflora
Cagra.0917s0010 2.0kb upstream 2.0kb upstream 6060 true Scaffold917: 40728-46787 Capsella grandiflora
Cagra.0917s0010 2.0kb upstream 2.0kb upstream 2000 false Scaffold917: 44788-46787 Capsella grandiflora
Cagra.0917s0010 2.0kb downstream 2.0kb downstream 6060 true Scaffold917: 38728-44787 Capsella grandiflora
Cagra.0917s0010 2.0kb downstream 2.0kb downstream 2000 false Scaffold917: 38728-40727 Capsella grandiflora
Cagra.0917s0010 5.0kb upstream 5.0kb upstream 9060 true Scaffold917: 40728-49787 Capsella grandiflora
Cagra.0917s0010 5.0kb upstream 5.0kb upstream 5000 false Scaffold917: 44788-49787 Capsella grandiflora
Cagra.0917s0010 5.0kb downstream 5.0kb downstream 9060 true Scaffold917: 35728-44787 Capsella grandiflora
Cagra.0917s0010 5.0kb downstream 5.0kb downstream 5000 false Scaffold917: 35728-40727 Capsella grandiflora
Cagra.0917s0010 10.0kb upstream 10.0kb upstream 14060 true Scaffold917: 40728-54787 Capsella grandiflora
Cagra.0917s0010 10.0kb upstream 10.0kb upstream 10000 false Scaffold917: 44788-54787 Capsella grandiflora
Cagra.0917s0010 10.0kb downstream 10.0kb downstream 14060 true Scaffold917: 30728-44787 Capsella grandiflora
Cagra.0917s0010 10.0kb downstream 10.0kb downstream 10000 false Scaffold917: 30728-40727 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365331 5261 Brassicaceae View MSA
123838611 5264 Brassicales-Malvales View MSA
124343365 5266 SBM View MSA
124239767 5268 Malvidae View MSA
124067534 5270 Rosid View MSA
123744941 5271 Pentapetalae View MSA
122793820 5272 Eudicot View MSA
122044869 5273 Angiosperm View MSA
121344749 5274 Embryophyte View MSA
123424102 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain