Gene : Cagra.0917s0070 C. grandiflora v1.1
Defline:  (1 of 2) PTHR22904:SF358 - CC-TETRATRICOPEPTIDE REPEAT PROTEIN Genomic Order:  70
Name:  ? Cagra.0917s0070 Secondary Identifier:  ? PAC:28909314
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0917s0070 0.5kb upstream 0.5kb upstream 2728 true Scaffold917: 307490-310217 Capsella grandiflora
Cagra.0917s0070 0.5kb upstream 0.5kb upstream 500 false Scaffold917: 307490-307989 Capsella grandiflora
Cagra.0917s0070 0.5kb downstream 0.5kb downstream 2728 true Scaffold917: 307990-310717 Capsella grandiflora
Cagra.0917s0070 0.5kb downstream 0.5kb downstream 500 false Scaffold917: 310218-310717 Capsella grandiflora
Cagra.0917s0070 1.0kb upstream 1.0kb upstream 3228 true Scaffold917: 306990-310217 Capsella grandiflora
Cagra.0917s0070 1.0kb upstream 1.0kb upstream 1000 false Scaffold917: 306990-307989 Capsella grandiflora
Cagra.0917s0070 1.0kb downstream 1.0kb downstream 3228 true Scaffold917: 307990-311217 Capsella grandiflora
Cagra.0917s0070 1.0kb downstream 1.0kb downstream 1000 false Scaffold917: 310218-311217 Capsella grandiflora
Cagra.0917s0070 2.0kb upstream 2.0kb upstream 4228 true Scaffold917: 305990-310217 Capsella grandiflora
Cagra.0917s0070 2.0kb upstream 2.0kb upstream 2000 false Scaffold917: 305990-307989 Capsella grandiflora
Cagra.0917s0070 2.0kb downstream 2.0kb downstream 4228 true Scaffold917: 307990-312217 Capsella grandiflora
Cagra.0917s0070 2.0kb downstream 2.0kb downstream 2000 false Scaffold917: 310218-312217 Capsella grandiflora
Cagra.0917s0070 5.0kb upstream 5.0kb upstream 7228 true Scaffold917: 302990-310217 Capsella grandiflora
Cagra.0917s0070 5.0kb upstream 5.0kb upstream 5000 false Scaffold917: 302990-307989 Capsella grandiflora
Cagra.0917s0070 5.0kb downstream 5.0kb downstream 7228 true Scaffold917: 307990-315217 Capsella grandiflora
Cagra.0917s0070 5.0kb downstream 5.0kb downstream 5000 false Scaffold917: 310218-315217 Capsella grandiflora
Cagra.0917s0070 10.0kb upstream 10.0kb upstream 12228 true Scaffold917: 297990-310217 Capsella grandiflora
Cagra.0917s0070 10.0kb upstream 10.0kb upstream 10000 false Scaffold917: 297990-307989 Capsella grandiflora
Cagra.0917s0070 10.0kb downstream 10.0kb downstream 12228 true Scaffold917: 307990-320217 Capsella grandiflora
Cagra.0917s0070 10.0kb downstream 10.0kb downstream 10000 false Scaffold917: 310218-320217 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364740 5261 Brassicaceae View MSA
123838346 5264 Brassicales-Malvales View MSA
124343835 5266 SBM View MSA
124254049 5268 Malvidae View MSA
124063288 5270 Rosid View MSA
123737789 5271 Pentapetalae View MSA
122790297 5272 Eudicot View MSA
122047040 5273 Angiosperm View MSA
121310683 5274 Embryophyte View MSA
123348108 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain