Gene : Cagra.0909s0016 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11614//PTHR11614:SF97 - PHOSPHOLIPASE-RELATED Genomic Order:  16
Name:  ? Cagra.0909s0016 Secondary Identifier:  ? PAC:28916708
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora LIPAS-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-7420 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0909s0016 0.5kb upstream 0.5kb upstream 2989 true Scaffold909: 44163-47151 Capsella grandiflora
Cagra.0909s0016 0.5kb upstream 0.5kb upstream 500 false Scaffold909: 46652-47151 Capsella grandiflora
Cagra.0909s0016 0.5kb downstream 0.5kb downstream 2989 true Scaffold909: 43663-46651 Capsella grandiflora
Cagra.0909s0016 0.5kb downstream 0.5kb downstream 500 false Scaffold909: 43663-44162 Capsella grandiflora
Cagra.0909s0016 1.0kb upstream 1.0kb upstream 3489 true Scaffold909: 44163-47651 Capsella grandiflora
Cagra.0909s0016 1.0kb upstream 1.0kb upstream 1000 false Scaffold909: 46652-47651 Capsella grandiflora
Cagra.0909s0016 1.0kb downstream 1.0kb downstream 3489 true Scaffold909: 43163-46651 Capsella grandiflora
Cagra.0909s0016 1.0kb downstream 1.0kb downstream 1000 false Scaffold909: 43163-44162 Capsella grandiflora
Cagra.0909s0016 2.0kb upstream 2.0kb upstream 4489 true Scaffold909: 44163-48651 Capsella grandiflora
Cagra.0909s0016 2.0kb upstream 2.0kb upstream 2000 false Scaffold909: 46652-48651 Capsella grandiflora
Cagra.0909s0016 2.0kb downstream 2.0kb downstream 4489 true Scaffold909: 42163-46651 Capsella grandiflora
Cagra.0909s0016 2.0kb downstream 2.0kb downstream 2000 false Scaffold909: 42163-44162 Capsella grandiflora
Cagra.0909s0016 5.0kb upstream 5.0kb upstream 7489 true Scaffold909: 44163-51651 Capsella grandiflora
Cagra.0909s0016 5.0kb upstream 5.0kb upstream 5000 false Scaffold909: 46652-51651 Capsella grandiflora
Cagra.0909s0016 5.0kb downstream 5.0kb downstream 7489 true Scaffold909: 39163-46651 Capsella grandiflora
Cagra.0909s0016 5.0kb downstream 5.0kb downstream 5000 false Scaffold909: 39163-44162 Capsella grandiflora
Cagra.0909s0016 10.0kb upstream 10.0kb upstream 12489 true Scaffold909: 44163-56651 Capsella grandiflora
Cagra.0909s0016 10.0kb upstream 10.0kb upstream 10000 false Scaffold909: 46652-56651 Capsella grandiflora
Cagra.0909s0016 10.0kb downstream 10.0kb downstream 12489 true Scaffold909: 34163-46651 Capsella grandiflora
Cagra.0909s0016 10.0kb downstream 10.0kb downstream 10000 false Scaffold909: 34163-44162 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371734 5261 Brassicaceae View MSA
123800221 5264 Brassicales-Malvales View MSA
124297663 5266 SBM View MSA
124149494 5268 Malvidae View MSA
123875295 5270 Rosid View MSA
123459143 5271 Pentapetalae View MSA
122494538 5272 Eudicot View MSA
122051494 5273 Angiosperm View MSA
121350082 5274 Embryophyte View MSA
123428617 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain