Gene : Cagra.0897s0057 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11472:SF1 - TFIIH BASAL TRANSCRIPTION FACTOR COMPLEX HELICASE XPD SUBUNIT Genomic Order:  57
Name:  ? Cagra.0897s0057 Secondary Identifier:  ? PAC:28902764
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.0897s0057 0.5kb upstream 0.5kb upstream 4939 true Scaffold897: 200772-205710 Capsella grandiflora
Cagra.0897s0057 0.5kb upstream 0.5kb upstream 500 false Scaffold897: 205211-205710 Capsella grandiflora
Cagra.0897s0057 0.5kb downstream 0.5kb downstream 4939 true Scaffold897: 200272-205210 Capsella grandiflora
Cagra.0897s0057 0.5kb downstream 0.5kb downstream 500 false Scaffold897: 200272-200771 Capsella grandiflora
Cagra.0897s0057 1.0kb upstream 1.0kb upstream 5439 true Scaffold897: 200772-206210 Capsella grandiflora
Cagra.0897s0057 1.0kb upstream 1.0kb upstream 1000 false Scaffold897: 205211-206210 Capsella grandiflora
Cagra.0897s0057 1.0kb downstream 1.0kb downstream 5439 true Scaffold897: 199772-205210 Capsella grandiflora
Cagra.0897s0057 1.0kb downstream 1.0kb downstream 1000 false Scaffold897: 199772-200771 Capsella grandiflora
Cagra.0897s0057 2.0kb upstream 2.0kb upstream 6439 true Scaffold897: 200772-207210 Capsella grandiflora
Cagra.0897s0057 2.0kb upstream 2.0kb upstream 2000 false Scaffold897: 205211-207210 Capsella grandiflora
Cagra.0897s0057 2.0kb downstream 2.0kb downstream 6439 true Scaffold897: 198772-205210 Capsella grandiflora
Cagra.0897s0057 2.0kb downstream 2.0kb downstream 2000 false Scaffold897: 198772-200771 Capsella grandiflora
Cagra.0897s0057 5.0kb upstream 5.0kb upstream 9439 true Scaffold897: 200772-210210 Capsella grandiflora
Cagra.0897s0057 5.0kb upstream 5.0kb upstream 5000 false Scaffold897: 205211-210210 Capsella grandiflora
Cagra.0897s0057 5.0kb downstream 5.0kb downstream 9439 true Scaffold897: 195772-205210 Capsella grandiflora
Cagra.0897s0057 5.0kb downstream 5.0kb downstream 5000 false Scaffold897: 195772-200771 Capsella grandiflora
Cagra.0897s0057 10.0kb upstream 10.0kb upstream 14439 true Scaffold897: 200772-215210 Capsella grandiflora
Cagra.0897s0057 10.0kb upstream 10.0kb upstream 10000 false Scaffold897: 205211-215210 Capsella grandiflora
Cagra.0897s0057 10.0kb downstream 10.0kb downstream 14439 true Scaffold897: 190772-205210 Capsella grandiflora
Cagra.0897s0057 10.0kb downstream 10.0kb downstream 10000 false Scaffold897: 190772-200771 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375319 5261 Brassicaceae View MSA
123832755 5264 Brassicales-Malvales View MSA
124340854 5266 SBM View MSA
124240996 5268 Malvidae View MSA
124062855 5270 Rosid View MSA
123737964 5271 Pentapetalae View MSA
122790118 5272 Eudicot View MSA
122046497 5273 Angiosperm View MSA
121344254 5274 Embryophyte View MSA
123426727 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain