Gene : Cagra.1179s0002 C. grandiflora v1.1
Defline:  (1 of 2) PTHR11362:SF9 - PROTEIN FLOWERING LOCUS T-RELATED Genomic Order:  2
Name:  ? Cagra.1179s0002 Secondary Identifier:  ? PAC:28901419
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1179s0002 0.5kb upstream 0.5kb upstream 1581 true Scaffold1179: 13546-15126 Capsella grandiflora
Cagra.1179s0002 0.5kb upstream 0.5kb upstream 427 false Scaffold1179: 14700-15126 Capsella grandiflora
Cagra.1179s0002 0.5kb downstream 0.5kb downstream 1654 true Scaffold1179: 13046-14699 Capsella grandiflora
Cagra.1179s0002 0.5kb downstream 0.5kb downstream 500 false Scaffold1179: 13046-13545 Capsella grandiflora
Cagra.1179s0002 1.0kb upstream 1.0kb upstream 1581 true Scaffold1179: 13546-15126 Capsella grandiflora
Cagra.1179s0002 1.0kb upstream 1.0kb upstream 427 false Scaffold1179: 14700-15126 Capsella grandiflora
Cagra.1179s0002 1.0kb downstream 1.0kb downstream 2154 true Scaffold1179: 12546-14699 Capsella grandiflora
Cagra.1179s0002 1.0kb downstream 1.0kb downstream 1000 false Scaffold1179: 12546-13545 Capsella grandiflora
Cagra.1179s0002 2.0kb upstream 2.0kb upstream 1581 true Scaffold1179: 13546-15126 Capsella grandiflora
Cagra.1179s0002 2.0kb upstream 2.0kb upstream 427 false Scaffold1179: 14700-15126 Capsella grandiflora
Cagra.1179s0002 2.0kb downstream 2.0kb downstream 3154 true Scaffold1179: 11546-14699 Capsella grandiflora
Cagra.1179s0002 2.0kb downstream 2.0kb downstream 2000 false Scaffold1179: 11546-13545 Capsella grandiflora
Cagra.1179s0002 5.0kb upstream 5.0kb upstream 1581 true Scaffold1179: 13546-15126 Capsella grandiflora
Cagra.1179s0002 5.0kb upstream 5.0kb upstream 427 false Scaffold1179: 14700-15126 Capsella grandiflora
Cagra.1179s0002 5.0kb downstream 5.0kb downstream 6154 true Scaffold1179: 8546-14699 Capsella grandiflora
Cagra.1179s0002 5.0kb downstream 5.0kb downstream 5000 false Scaffold1179: 8546-13545 Capsella grandiflora
Cagra.1179s0002 10.0kb upstream 10.0kb upstream 1581 true Scaffold1179: 13546-15126 Capsella grandiflora
Cagra.1179s0002 10.0kb upstream 10.0kb upstream 427 false Scaffold1179: 14700-15126 Capsella grandiflora
Cagra.1179s0002 10.0kb downstream 10.0kb downstream 11154 true Scaffold1179: 3546-14699 Capsella grandiflora
Cagra.1179s0002 10.0kb downstream 10.0kb downstream 10000 false Scaffold1179: 3546-13545 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122332384 5261 Brassicaceae Singleton cluster - no MSA
123773459 5264 Brassicales-Malvales Singleton cluster - no MSA
124349727 5266 SBM View MSA
124247304 5268 Malvidae View MSA
124039448 5270 Rosid View MSA
123742341 5271 Pentapetalae View MSA
122797887 5272 Eudicot View MSA
122048394 5273 Angiosperm View MSA
121310951 5274 Embryophyte View MSA
123348320 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain