Gene : Cagra.1189s0016 C. grandiflora v1.1
Defline:  (1 of 2) PF00069//PF00954//PF01453//PF08276//PF11883 - Protein kinase domain (Pkinase) // S-locus glycoprotein domain (S_locus_glycop) // D-mannose binding lectin (B_lectin) // PAN-like domain (PAN_2) // Domain of unknown function (DUF3403) (DUF3403) Genomic Order:  16
Name:  ? Cagra.1189s0016 Secondary Identifier:  ? PAC:28908940
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1189s0016 0.5kb upstream 0.5kb upstream 3733 true Scaffold1189: 56313-60045 Capsella grandiflora
Cagra.1189s0016 0.5kb upstream 0.5kb upstream 500 false Scaffold1189: 56313-56812 Capsella grandiflora
Cagra.1189s0016 0.5kb downstream 0.5kb downstream 3733 true Scaffold1189: 56813-60545 Capsella grandiflora
Cagra.1189s0016 0.5kb downstream 0.5kb downstream 500 false Scaffold1189: 60046-60545 Capsella grandiflora
Cagra.1189s0016 1.0kb upstream 1.0kb upstream 4233 true Scaffold1189: 55813-60045 Capsella grandiflora
Cagra.1189s0016 1.0kb upstream 1.0kb upstream 1000 false Scaffold1189: 55813-56812 Capsella grandiflora
Cagra.1189s0016 1.0kb downstream 1.0kb downstream 4233 true Scaffold1189: 56813-61045 Capsella grandiflora
Cagra.1189s0016 1.0kb downstream 1.0kb downstream 1000 false Scaffold1189: 60046-61045 Capsella grandiflora
Cagra.1189s0016 2.0kb upstream 2.0kb upstream 5233 true Scaffold1189: 54813-60045 Capsella grandiflora
Cagra.1189s0016 2.0kb upstream 2.0kb upstream 2000 false Scaffold1189: 54813-56812 Capsella grandiflora
Cagra.1189s0016 2.0kb downstream 2.0kb downstream 5233 true Scaffold1189: 56813-62045 Capsella grandiflora
Cagra.1189s0016 2.0kb downstream 2.0kb downstream 2000 false Scaffold1189: 60046-62045 Capsella grandiflora
Cagra.1189s0016 5.0kb upstream 5.0kb upstream 8233 true Scaffold1189: 51813-60045 Capsella grandiflora
Cagra.1189s0016 5.0kb upstream 5.0kb upstream 5000 false Scaffold1189: 51813-56812 Capsella grandiflora
Cagra.1189s0016 5.0kb downstream 5.0kb downstream 8233 true Scaffold1189: 56813-65045 Capsella grandiflora
Cagra.1189s0016 5.0kb downstream 5.0kb downstream 5000 false Scaffold1189: 60046-65045 Capsella grandiflora
Cagra.1189s0016 10.0kb upstream 10.0kb upstream 13233 true Scaffold1189: 46813-60045 Capsella grandiflora
Cagra.1189s0016 10.0kb upstream 10.0kb upstream 10000 false Scaffold1189: 46813-56812 Capsella grandiflora
Cagra.1189s0016 10.0kb downstream 10.0kb downstream 13233 true Scaffold1189: 56813-70045 Capsella grandiflora
Cagra.1189s0016 10.0kb downstream 10.0kb downstream 10000 false Scaffold1189: 60046-70045 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029981 5273 Angiosperm View MSA
122332388 5261 Brassicaceae Singleton cluster - no MSA
123773463 5264 Brassicales-Malvales Singleton cluster - no MSA
124271946 5266 SBM Singleton cluster - no MSA
124127871 5268 Malvidae Singleton cluster - no MSA
124074997 5270 Rosid View MSA
123757504 5271 Pentapetalae View MSA
122778549 5272 Eudicot View MSA
121299222 5274 Embryophyte View MSA
123337122 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain