Gene : Cagra.1125s0005 C. grandiflora v1.1
Defline:  (1 of 3) PF05755 - Rubber elongation factor protein (REF) (REF) Genomic Order:  5
Name:  ? Cagra.1125s0005 Secondary Identifier:  ? PAC:28910633
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1125s0005 0.5kb upstream 0.5kb upstream 1761 true Scaffold1125: 15782-17542 Capsella grandiflora
Cagra.1125s0005 0.5kb upstream 0.5kb upstream 500 false Scaffold1125: 15782-16281 Capsella grandiflora
Cagra.1125s0005 0.5kb downstream 0.5kb downstream 1761 true Scaffold1125: 16282-18042 Capsella grandiflora
Cagra.1125s0005 0.5kb downstream 0.5kb downstream 500 false Scaffold1125: 17543-18042 Capsella grandiflora
Cagra.1125s0005 1.0kb upstream 1.0kb upstream 2261 true Scaffold1125: 15282-17542 Capsella grandiflora
Cagra.1125s0005 1.0kb upstream 1.0kb upstream 1000 false Scaffold1125: 15282-16281 Capsella grandiflora
Cagra.1125s0005 1.0kb downstream 1.0kb downstream 2261 true Scaffold1125: 16282-18542 Capsella grandiflora
Cagra.1125s0005 1.0kb downstream 1.0kb downstream 1000 false Scaffold1125: 17543-18542 Capsella grandiflora
Cagra.1125s0005 2.0kb upstream 2.0kb upstream 3261 true Scaffold1125: 14282-17542 Capsella grandiflora
Cagra.1125s0005 2.0kb upstream 2.0kb upstream 2000 false Scaffold1125: 14282-16281 Capsella grandiflora
Cagra.1125s0005 2.0kb downstream 2.0kb downstream 3261 true Scaffold1125: 16282-19542 Capsella grandiflora
Cagra.1125s0005 2.0kb downstream 2.0kb downstream 2000 false Scaffold1125: 17543-19542 Capsella grandiflora
Cagra.1125s0005 5.0kb upstream 5.0kb upstream 6261 true Scaffold1125: 11282-17542 Capsella grandiflora
Cagra.1125s0005 5.0kb upstream 5.0kb upstream 5000 false Scaffold1125: 11282-16281 Capsella grandiflora
Cagra.1125s0005 5.0kb downstream 5.0kb downstream 6261 true Scaffold1125: 16282-22542 Capsella grandiflora
Cagra.1125s0005 5.0kb downstream 5.0kb downstream 5000 false Scaffold1125: 17543-22542 Capsella grandiflora
Cagra.1125s0005 10.0kb upstream 10.0kb upstream 11261 true Scaffold1125: 6282-17542 Capsella grandiflora
Cagra.1125s0005 10.0kb upstream 10.0kb upstream 10000 false Scaffold1125: 6282-16281 Capsella grandiflora
Cagra.1125s0005 10.0kb downstream 10.0kb downstream 11261 true Scaffold1125: 16282-27542 Capsella grandiflora
Cagra.1125s0005 10.0kb downstream 10.0kb downstream 10000 false Scaffold1125: 17543-27542 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362420 5261 Brassicaceae View MSA
123838217 5264 Brassicales-Malvales View MSA
124342013 5266 SBM View MSA
124246485 5268 Malvidae View MSA
124068365 5270 Rosid View MSA
123736547 5271 Pentapetalae View MSA
122769867 5272 Eudicot View MSA
122050006 5273 Angiosperm View MSA
121311681 5274 Embryophyte View MSA
123348946 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain