Gene : Cagra.1317s0015 C. grandiflora v1.1
Defline:  (1 of 1) PTHR11709:SF66 - LACCASE-17 Genomic Order:  15
Name:  ? Cagra.1317s0015 Secondary Identifier:  ? PAC:28910499
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5466 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1317s0015 0.5kb upstream 0.5kb upstream 3038 true Scaffold1317: 58831-61868 Capsella grandiflora
Cagra.1317s0015 0.5kb upstream 0.5kb upstream 500 false Scaffold1317: 61369-61868 Capsella grandiflora
Cagra.1317s0015 0.5kb downstream 0.5kb downstream 3038 true Scaffold1317: 58331-61368 Capsella grandiflora
Cagra.1317s0015 0.5kb downstream 0.5kb downstream 500 false Scaffold1317: 58331-58830 Capsella grandiflora
Cagra.1317s0015 1.0kb upstream 1.0kb upstream 3538 true Scaffold1317: 58831-62368 Capsella grandiflora
Cagra.1317s0015 1.0kb upstream 1.0kb upstream 1000 false Scaffold1317: 61369-62368 Capsella grandiflora
Cagra.1317s0015 1.0kb downstream 1.0kb downstream 3538 true Scaffold1317: 57831-61368 Capsella grandiflora
Cagra.1317s0015 1.0kb downstream 1.0kb downstream 1000 false Scaffold1317: 57831-58830 Capsella grandiflora
Cagra.1317s0015 2.0kb upstream 2.0kb upstream 4538 true Scaffold1317: 58831-63368 Capsella grandiflora
Cagra.1317s0015 2.0kb upstream 2.0kb upstream 2000 false Scaffold1317: 61369-63368 Capsella grandiflora
Cagra.1317s0015 2.0kb downstream 2.0kb downstream 4538 true Scaffold1317: 56831-61368 Capsella grandiflora
Cagra.1317s0015 2.0kb downstream 2.0kb downstream 2000 false Scaffold1317: 56831-58830 Capsella grandiflora
Cagra.1317s0015 5.0kb upstream 5.0kb upstream 7538 true Scaffold1317: 58831-66368 Capsella grandiflora
Cagra.1317s0015 5.0kb upstream 5.0kb upstream 5000 false Scaffold1317: 61369-66368 Capsella grandiflora
Cagra.1317s0015 5.0kb downstream 5.0kb downstream 7538 true Scaffold1317: 53831-61368 Capsella grandiflora
Cagra.1317s0015 5.0kb downstream 5.0kb downstream 5000 false Scaffold1317: 53831-58830 Capsella grandiflora
Cagra.1317s0015 10.0kb upstream 10.0kb upstream 12538 true Scaffold1317: 58831-71368 Capsella grandiflora
Cagra.1317s0015 10.0kb upstream 10.0kb upstream 10000 false Scaffold1317: 61369-71368 Capsella grandiflora
Cagra.1317s0015 10.0kb downstream 10.0kb downstream 12538 true Scaffold1317: 48831-61368 Capsella grandiflora
Cagra.1317s0015 10.0kb downstream 10.0kb downstream 10000 false Scaffold1317: 48831-58830 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361534 5261 Brassicaceae View MSA
123836632 5264 Brassicales-Malvales View MSA
124344655 5266 SBM View MSA
124251749 5268 Malvidae View MSA
124062715 5270 Rosid View MSA
123751220 5271 Pentapetalae View MSA
122795105 5272 Eudicot View MSA
122050716 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain