Gene : Cagra.1317s0033 C. grandiflora v1.1
Defline:  (1 of 15) PF16135 - TPL-binding domain in jasmonate signalling (Jas) Genomic Order:  33
Name:  ? Cagra.1317s0033 Secondary Identifier:  ? PAC:28910428
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1317s0033 0.5kb upstream 0.5kb upstream 2721 true Scaffold1317: 115126-117846 Capsella grandiflora
Cagra.1317s0033 0.5kb upstream 0.5kb upstream 500 false Scaffold1317: 117347-117846 Capsella grandiflora
Cagra.1317s0033 0.5kb downstream 0.5kb downstream 2721 true Scaffold1317: 114626-117346 Capsella grandiflora
Cagra.1317s0033 0.5kb downstream 0.5kb downstream 500 false Scaffold1317: 114626-115125 Capsella grandiflora
Cagra.1317s0033 1.0kb upstream 1.0kb upstream 3221 true Scaffold1317: 115126-118346 Capsella grandiflora
Cagra.1317s0033 1.0kb upstream 1.0kb upstream 1000 false Scaffold1317: 117347-118346 Capsella grandiflora
Cagra.1317s0033 1.0kb downstream 1.0kb downstream 3221 true Scaffold1317: 114126-117346 Capsella grandiflora
Cagra.1317s0033 1.0kb downstream 1.0kb downstream 1000 false Scaffold1317: 114126-115125 Capsella grandiflora
Cagra.1317s0033 2.0kb upstream 2.0kb upstream 4221 true Scaffold1317: 115126-119346 Capsella grandiflora
Cagra.1317s0033 2.0kb upstream 2.0kb upstream 2000 false Scaffold1317: 117347-119346 Capsella grandiflora
Cagra.1317s0033 2.0kb downstream 2.0kb downstream 4221 true Scaffold1317: 113126-117346 Capsella grandiflora
Cagra.1317s0033 2.0kb downstream 2.0kb downstream 2000 false Scaffold1317: 113126-115125 Capsella grandiflora
Cagra.1317s0033 5.0kb upstream 5.0kb upstream 7221 true Scaffold1317: 115126-122346 Capsella grandiflora
Cagra.1317s0033 5.0kb upstream 5.0kb upstream 5000 false Scaffold1317: 117347-122346 Capsella grandiflora
Cagra.1317s0033 5.0kb downstream 5.0kb downstream 7221 true Scaffold1317: 110126-117346 Capsella grandiflora
Cagra.1317s0033 5.0kb downstream 5.0kb downstream 5000 false Scaffold1317: 110126-115125 Capsella grandiflora
Cagra.1317s0033 10.0kb upstream 10.0kb upstream 12221 true Scaffold1317: 115126-127346 Capsella grandiflora
Cagra.1317s0033 10.0kb upstream 10.0kb upstream 10000 false Scaffold1317: 117347-127346 Capsella grandiflora
Cagra.1317s0033 10.0kb downstream 10.0kb downstream 12221 true Scaffold1317: 105126-117346 Capsella grandiflora
Cagra.1317s0033 10.0kb downstream 10.0kb downstream 10000 false Scaffold1317: 105126-115125 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365753 5261 Brassicaceae View MSA
123834835 5264 Brassicales-Malvales View MSA
124340755 5266 SBM View MSA
124237699 5268 Malvidae View MSA
124065450 5270 Rosid View MSA
123747463 5271 Pentapetalae View MSA
122794643 5272 Eudicot View MSA
122051104 5273 Angiosperm View MSA
121312296 5274 Embryophyte View MSA
123349483 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain