Gene : Cagra.1317s0054 C. grandiflora v1.1
Defline:  (1 of 1) PF01535//PF04776//PF13041 - PPR repeat (PPR) // Protein of unknown function (DUF626) (DUF626) // PPR repeat family (PPR_2) Genomic Order:  54
Name:  ? Cagra.1317s0054 Secondary Identifier:  ? PAC:28910455
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1317s0054 0.5kb upstream 0.5kb upstream 2795 true Scaffold1317: 200949-203743 Capsella grandiflora
Cagra.1317s0054 0.5kb upstream 0.5kb upstream 500 false Scaffold1317: 200949-201448 Capsella grandiflora
Cagra.1317s0054 0.5kb downstream 0.5kb downstream 2795 true Scaffold1317: 201449-204243 Capsella grandiflora
Cagra.1317s0054 0.5kb downstream 0.5kb downstream 500 false Scaffold1317: 203744-204243 Capsella grandiflora
Cagra.1317s0054 1.0kb upstream 1.0kb upstream 3295 true Scaffold1317: 200449-203743 Capsella grandiflora
Cagra.1317s0054 1.0kb upstream 1.0kb upstream 1000 false Scaffold1317: 200449-201448 Capsella grandiflora
Cagra.1317s0054 1.0kb downstream 1.0kb downstream 3295 true Scaffold1317: 201449-204743 Capsella grandiflora
Cagra.1317s0054 1.0kb downstream 1.0kb downstream 1000 false Scaffold1317: 203744-204743 Capsella grandiflora
Cagra.1317s0054 2.0kb upstream 2.0kb upstream 4295 true Scaffold1317: 199449-203743 Capsella grandiflora
Cagra.1317s0054 2.0kb upstream 2.0kb upstream 2000 false Scaffold1317: 199449-201448 Capsella grandiflora
Cagra.1317s0054 2.0kb downstream 2.0kb downstream 4295 true Scaffold1317: 201449-205743 Capsella grandiflora
Cagra.1317s0054 2.0kb downstream 2.0kb downstream 2000 false Scaffold1317: 203744-205743 Capsella grandiflora
Cagra.1317s0054 5.0kb upstream 5.0kb upstream 7295 true Scaffold1317: 196449-203743 Capsella grandiflora
Cagra.1317s0054 5.0kb upstream 5.0kb upstream 5000 false Scaffold1317: 196449-201448 Capsella grandiflora
Cagra.1317s0054 5.0kb downstream 5.0kb downstream 7295 true Scaffold1317: 201449-208743 Capsella grandiflora
Cagra.1317s0054 5.0kb downstream 5.0kb downstream 5000 false Scaffold1317: 203744-208743 Capsella grandiflora
Cagra.1317s0054 10.0kb upstream 10.0kb upstream 12295 true Scaffold1317: 191449-203743 Capsella grandiflora
Cagra.1317s0054 10.0kb upstream 10.0kb upstream 10000 false Scaffold1317: 191449-201448 Capsella grandiflora
Cagra.1317s0054 10.0kb downstream 10.0kb downstream 12295 true Scaffold1317: 201449-213743 Capsella grandiflora
Cagra.1317s0054 10.0kb downstream 10.0kb downstream 10000 false Scaffold1317: 203744-213743 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364921 5261 Brassicaceae View MSA
123841514 5264 Brassicales-Malvales View MSA
124345869 5266 SBM View MSA
124254495 5268 Malvidae View MSA
124070101 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain