Gene : Cagra.1080s0017 C. grandiflora v1.1
Defline:  (1 of 1) PTHR13697//PTHR13697:SF20 - PHOSPHOFRUCTOKINASE Genomic Order:  17
Name:  ? Cagra.1080s0017 Secondary Identifier:  ? PAC:28912274
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora ANAEROFRUCAT-PWY Capsella grandiflora pathologic  
Cgrandiflora ANAGLYCOLYSIS-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-1042 Capsella grandiflora pathologic  
Cgrandiflora PWY-5464 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1080s0017 0.5kb upstream 0.5kb upstream 3490 true Scaffold1080: 83613-87102 Capsella grandiflora
Cagra.1080s0017 0.5kb upstream 0.5kb upstream 500 false Scaffold1080: 86603-87102 Capsella grandiflora
Cagra.1080s0017 0.5kb downstream 0.5kb downstream 3490 true Scaffold1080: 83113-86602 Capsella grandiflora
Cagra.1080s0017 0.5kb downstream 0.5kb downstream 500 false Scaffold1080: 83113-83612 Capsella grandiflora
Cagra.1080s0017 1.0kb upstream 1.0kb upstream 3990 true Scaffold1080: 83613-87602 Capsella grandiflora
Cagra.1080s0017 1.0kb upstream 1.0kb upstream 1000 false Scaffold1080: 86603-87602 Capsella grandiflora
Cagra.1080s0017 1.0kb downstream 1.0kb downstream 3990 true Scaffold1080: 82613-86602 Capsella grandiflora
Cagra.1080s0017 1.0kb downstream 1.0kb downstream 1000 false Scaffold1080: 82613-83612 Capsella grandiflora
Cagra.1080s0017 2.0kb upstream 2.0kb upstream 4990 true Scaffold1080: 83613-88602 Capsella grandiflora
Cagra.1080s0017 2.0kb upstream 2.0kb upstream 2000 false Scaffold1080: 86603-88602 Capsella grandiflora
Cagra.1080s0017 2.0kb downstream 2.0kb downstream 4990 true Scaffold1080: 81613-86602 Capsella grandiflora
Cagra.1080s0017 2.0kb downstream 2.0kb downstream 2000 false Scaffold1080: 81613-83612 Capsella grandiflora
Cagra.1080s0017 5.0kb upstream 5.0kb upstream 7990 true Scaffold1080: 83613-91602 Capsella grandiflora
Cagra.1080s0017 5.0kb upstream 5.0kb upstream 5000 false Scaffold1080: 86603-91602 Capsella grandiflora
Cagra.1080s0017 5.0kb downstream 5.0kb downstream 7990 true Scaffold1080: 78613-86602 Capsella grandiflora
Cagra.1080s0017 5.0kb downstream 5.0kb downstream 5000 false Scaffold1080: 78613-83612 Capsella grandiflora
Cagra.1080s0017 10.0kb upstream 10.0kb upstream 12990 true Scaffold1080: 83613-96602 Capsella grandiflora
Cagra.1080s0017 10.0kb upstream 10.0kb upstream 10000 false Scaffold1080: 86603-96602 Capsella grandiflora
Cagra.1080s0017 10.0kb downstream 10.0kb downstream 12990 true Scaffold1080: 73613-86602 Capsella grandiflora
Cagra.1080s0017 10.0kb downstream 10.0kb downstream 10000 false Scaffold1080: 73613-83612 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375499 5261 Brassicaceae View MSA
123831000 5264 Brassicales-Malvales View MSA
124339627 5266 SBM View MSA
124240075 5268 Malvidae View MSA
124074874 5270 Rosid View MSA
123750094 5271 Pentapetalae View MSA
122793995 5272 Eudicot View MSA
122043440 5273 Angiosperm View MSA
121347937 5274 Embryophyte View MSA
123424464 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain