Gene : Cagra.1080s0021 C. grandiflora v1.1
Defline:  (1 of 3) PTHR24326:SF196 - HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-16-RELATED Genomic Order:  21
Name:  ? Cagra.1080s0021 Secondary Identifier:  ? PAC:28912254
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1080s0021 0.5kb upstream 0.5kb upstream 2083 true Scaffold1080: 97702-99784 Capsella grandiflora
Cagra.1080s0021 0.5kb upstream 0.5kb upstream 500 false Scaffold1080: 97702-98201 Capsella grandiflora
Cagra.1080s0021 0.5kb downstream 0.5kb downstream 2083 true Scaffold1080: 98202-100284 Capsella grandiflora
Cagra.1080s0021 0.5kb downstream 0.5kb downstream 500 false Scaffold1080: 99785-100284 Capsella grandiflora
Cagra.1080s0021 1.0kb upstream 1.0kb upstream 2583 true Scaffold1080: 97202-99784 Capsella grandiflora
Cagra.1080s0021 1.0kb upstream 1.0kb upstream 1000 false Scaffold1080: 97202-98201 Capsella grandiflora
Cagra.1080s0021 1.0kb downstream 1.0kb downstream 2583 true Scaffold1080: 98202-100784 Capsella grandiflora
Cagra.1080s0021 1.0kb downstream 1.0kb downstream 1000 false Scaffold1080: 99785-100784 Capsella grandiflora
Cagra.1080s0021 2.0kb upstream 2.0kb upstream 3583 true Scaffold1080: 96202-99784 Capsella grandiflora
Cagra.1080s0021 2.0kb upstream 2.0kb upstream 2000 false Scaffold1080: 96202-98201 Capsella grandiflora
Cagra.1080s0021 2.0kb downstream 2.0kb downstream 3583 true Scaffold1080: 98202-101784 Capsella grandiflora
Cagra.1080s0021 2.0kb downstream 2.0kb downstream 2000 false Scaffold1080: 99785-101784 Capsella grandiflora
Cagra.1080s0021 5.0kb upstream 5.0kb upstream 6583 true Scaffold1080: 93202-99784 Capsella grandiflora
Cagra.1080s0021 5.0kb upstream 5.0kb upstream 5000 false Scaffold1080: 93202-98201 Capsella grandiflora
Cagra.1080s0021 5.0kb downstream 5.0kb downstream 5796 true Scaffold1080: 98202-103997 Capsella grandiflora
Cagra.1080s0021 5.0kb downstream 5.0kb downstream 4213 false Scaffold1080: 99785-103997 Capsella grandiflora
Cagra.1080s0021 10.0kb upstream 10.0kb upstream 11583 true Scaffold1080: 88202-99784 Capsella grandiflora
Cagra.1080s0021 10.0kb upstream 10.0kb upstream 10000 false Scaffold1080: 88202-98201 Capsella grandiflora
Cagra.1080s0021 10.0kb downstream 10.0kb downstream 5796 true Scaffold1080: 98202-103997 Capsella grandiflora
Cagra.1080s0021 10.0kb downstream 10.0kb downstream 4213 false Scaffold1080: 99785-103997 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367358 5261 Brassicaceae View MSA
123831293 5264 Brassicales-Malvales View MSA
124351639 5266 SBM View MSA
124253703 5268 Malvidae View MSA
124072423 5270 Rosid View MSA
123750844 5271 Pentapetalae View MSA
122791201 5272 Eudicot View MSA
122049195 5273 Angiosperm View MSA
121351579 5274 Embryophyte View MSA
123382235 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain