Gene : Cagra.1085s0010 C. grandiflora v1.1
Defline:  (1 of 1) PTHR30566:SF13 - MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC Genomic Order:  10
Name:  ? Cagra.1085s0010 Secondary Identifier:  ? PAC:28900557
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1085s0010 0.5kb upstream 0.5kb upstream 4806 true Scaffold1085: 44924-49729 Capsella grandiflora
Cagra.1085s0010 0.5kb upstream 0.5kb upstream 500 false Scaffold1085: 44924-45423 Capsella grandiflora
Cagra.1085s0010 0.5kb downstream 0.5kb downstream 4806 true Scaffold1085: 45424-50229 Capsella grandiflora
Cagra.1085s0010 0.5kb downstream 0.5kb downstream 500 false Scaffold1085: 49730-50229 Capsella grandiflora
Cagra.1085s0010 1.0kb upstream 1.0kb upstream 5306 true Scaffold1085: 44424-49729 Capsella grandiflora
Cagra.1085s0010 1.0kb upstream 1.0kb upstream 1000 false Scaffold1085: 44424-45423 Capsella grandiflora
Cagra.1085s0010 1.0kb downstream 1.0kb downstream 5306 true Scaffold1085: 45424-50729 Capsella grandiflora
Cagra.1085s0010 1.0kb downstream 1.0kb downstream 1000 false Scaffold1085: 49730-50729 Capsella grandiflora
Cagra.1085s0010 2.0kb upstream 2.0kb upstream 6306 true Scaffold1085: 43424-49729 Capsella grandiflora
Cagra.1085s0010 2.0kb upstream 2.0kb upstream 2000 false Scaffold1085: 43424-45423 Capsella grandiflora
Cagra.1085s0010 2.0kb downstream 2.0kb downstream 6306 true Scaffold1085: 45424-51729 Capsella grandiflora
Cagra.1085s0010 2.0kb downstream 2.0kb downstream 2000 false Scaffold1085: 49730-51729 Capsella grandiflora
Cagra.1085s0010 5.0kb upstream 5.0kb upstream 9306 true Scaffold1085: 40424-49729 Capsella grandiflora
Cagra.1085s0010 5.0kb upstream 5.0kb upstream 5000 false Scaffold1085: 40424-45423 Capsella grandiflora
Cagra.1085s0010 5.0kb downstream 5.0kb downstream 9306 true Scaffold1085: 45424-54729 Capsella grandiflora
Cagra.1085s0010 5.0kb downstream 5.0kb downstream 5000 false Scaffold1085: 49730-54729 Capsella grandiflora
Cagra.1085s0010 10.0kb upstream 10.0kb upstream 14306 true Scaffold1085: 35424-49729 Capsella grandiflora
Cagra.1085s0010 10.0kb upstream 10.0kb upstream 10000 false Scaffold1085: 35424-45423 Capsella grandiflora
Cagra.1085s0010 10.0kb downstream 10.0kb downstream 14306 true Scaffold1085: 45424-59729 Capsella grandiflora
Cagra.1085s0010 10.0kb downstream 10.0kb downstream 10000 false Scaffold1085: 49730-59729 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124339797 5266 SBM View MSA
122361746 5261 Brassicaceae View MSA
123835349 5264 Brassicales-Malvales View MSA
124250373 5268 Malvidae View MSA
124065899 5270 Rosid View MSA
123747052 5271 Pentapetalae View MSA
122795595 5272 Eudicot View MSA
122049978 5273 Angiosperm View MSA
121345277 5274 Embryophyte View MSA
123427972 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain