Gene : Cagra.1085s0054 C. grandiflora v1.1
Defline:  (1 of 2) PTHR22952:SF180 - TRANSCRIPTION FACTOR TGA1-RELATED Genomic Order:  54
Name:  ? Cagra.1085s0054 Secondary Identifier:  ? PAC:28900617
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1085s0054 0.5kb upstream 0.5kb upstream 3547 true Scaffold1085: 207510-211056 Capsella grandiflora
Cagra.1085s0054 0.5kb upstream 0.5kb upstream 500 false Scaffold1085: 207510-208009 Capsella grandiflora
Cagra.1085s0054 0.5kb downstream 0.5kb downstream 3547 true Scaffold1085: 208010-211556 Capsella grandiflora
Cagra.1085s0054 0.5kb downstream 0.5kb downstream 500 false Scaffold1085: 211057-211556 Capsella grandiflora
Cagra.1085s0054 1.0kb upstream 1.0kb upstream 4047 true Scaffold1085: 207010-211056 Capsella grandiflora
Cagra.1085s0054 1.0kb upstream 1.0kb upstream 1000 false Scaffold1085: 207010-208009 Capsella grandiflora
Cagra.1085s0054 1.0kb downstream 1.0kb downstream 4047 true Scaffold1085: 208010-212056 Capsella grandiflora
Cagra.1085s0054 1.0kb downstream 1.0kb downstream 1000 false Scaffold1085: 211057-212056 Capsella grandiflora
Cagra.1085s0054 2.0kb upstream 2.0kb upstream 5047 true Scaffold1085: 206010-211056 Capsella grandiflora
Cagra.1085s0054 2.0kb upstream 2.0kb upstream 2000 false Scaffold1085: 206010-208009 Capsella grandiflora
Cagra.1085s0054 2.0kb downstream 2.0kb downstream 5047 true Scaffold1085: 208010-213056 Capsella grandiflora
Cagra.1085s0054 2.0kb downstream 2.0kb downstream 2000 false Scaffold1085: 211057-213056 Capsella grandiflora
Cagra.1085s0054 5.0kb upstream 5.0kb upstream 8047 true Scaffold1085: 203010-211056 Capsella grandiflora
Cagra.1085s0054 5.0kb upstream 5.0kb upstream 5000 false Scaffold1085: 203010-208009 Capsella grandiflora
Cagra.1085s0054 5.0kb downstream 5.0kb downstream 8047 true Scaffold1085: 208010-216056 Capsella grandiflora
Cagra.1085s0054 5.0kb downstream 5.0kb downstream 5000 false Scaffold1085: 211057-216056 Capsella grandiflora
Cagra.1085s0054 10.0kb upstream 10.0kb upstream 13047 true Scaffold1085: 198010-211056 Capsella grandiflora
Cagra.1085s0054 10.0kb upstream 10.0kb upstream 10000 false Scaffold1085: 198010-208009 Capsella grandiflora
Cagra.1085s0054 10.0kb downstream 10.0kb downstream 13047 true Scaffold1085: 208010-221056 Capsella grandiflora
Cagra.1085s0054 10.0kb downstream 10.0kb downstream 10000 false Scaffold1085: 211057-221056 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377000 5261 Brassicaceae View MSA
123841519 5264 Brassicales-Malvales View MSA
124336651 5266 SBM View MSA
124237521 5268 Malvidae View MSA
124071998 5270 Rosid View MSA
123743683 5271 Pentapetalae View MSA
122792849 5272 Eudicot View MSA
122045464 5273 Angiosperm View MSA
121310452 5274 Embryophyte View MSA
123347930 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain