Gene : Cagra.1062s0044 C. grandiflora v1.1
Defline:  (1 of 3) PF03807//PF14833 - NADP oxidoreductase coenzyme F420-dependent (F420_oxidored) // NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase (NAD_binding_11) Genomic Order:  44
Name:  ? Cagra.1062s0044 Secondary Identifier:  ? PAC:28908853
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora VALDEG-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1062s0044 0.5kb upstream 0.5kb upstream 4482 true Scaffold1062: 137259-141740 Capsella grandiflora
Cagra.1062s0044 0.5kb upstream 0.5kb upstream 500 false Scaffold1062: 137259-137758 Capsella grandiflora
Cagra.1062s0044 0.5kb downstream 0.5kb downstream 4482 true Scaffold1062: 137759-142240 Capsella grandiflora
Cagra.1062s0044 0.5kb downstream 0.5kb downstream 500 false Scaffold1062: 141741-142240 Capsella grandiflora
Cagra.1062s0044 1.0kb upstream 1.0kb upstream 4982 true Scaffold1062: 136759-141740 Capsella grandiflora
Cagra.1062s0044 1.0kb upstream 1.0kb upstream 1000 false Scaffold1062: 136759-137758 Capsella grandiflora
Cagra.1062s0044 1.0kb downstream 1.0kb downstream 4982 true Scaffold1062: 137759-142740 Capsella grandiflora
Cagra.1062s0044 1.0kb downstream 1.0kb downstream 1000 false Scaffold1062: 141741-142740 Capsella grandiflora
Cagra.1062s0044 2.0kb upstream 2.0kb upstream 5982 true Scaffold1062: 135759-141740 Capsella grandiflora
Cagra.1062s0044 2.0kb upstream 2.0kb upstream 2000 false Scaffold1062: 135759-137758 Capsella grandiflora
Cagra.1062s0044 2.0kb downstream 2.0kb downstream 5982 true Scaffold1062: 137759-143740 Capsella grandiflora
Cagra.1062s0044 2.0kb downstream 2.0kb downstream 2000 false Scaffold1062: 141741-143740 Capsella grandiflora
Cagra.1062s0044 5.0kb upstream 5.0kb upstream 8982 true Scaffold1062: 132759-141740 Capsella grandiflora
Cagra.1062s0044 5.0kb upstream 5.0kb upstream 5000 false Scaffold1062: 132759-137758 Capsella grandiflora
Cagra.1062s0044 5.0kb downstream 5.0kb downstream 8982 true Scaffold1062: 137759-146740 Capsella grandiflora
Cagra.1062s0044 5.0kb downstream 5.0kb downstream 5000 false Scaffold1062: 141741-146740 Capsella grandiflora
Cagra.1062s0044 10.0kb upstream 10.0kb upstream 13982 true Scaffold1062: 127759-141740 Capsella grandiflora
Cagra.1062s0044 10.0kb upstream 10.0kb upstream 10000 false Scaffold1062: 127759-137758 Capsella grandiflora
Cagra.1062s0044 10.0kb downstream 10.0kb downstream 13982 true Scaffold1062: 137759-151740 Capsella grandiflora
Cagra.1062s0044 10.0kb downstream 10.0kb downstream 10000 false Scaffold1062: 141741-151740 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377505 5261 Brassicaceae View MSA
123831545 5264 Brassicales-Malvales View MSA
124341286 5266 SBM View MSA
124237017 5268 Malvidae View MSA
124062564 5270 Rosid View MSA
123738883 5271 Pentapetalae View MSA
122787575 5272 Eudicot View MSA
122045971 5273 Angiosperm View MSA
121347535 5274 Embryophyte View MSA
123424560 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain