Gene : Cagra.1080s0007 C. grandiflora v1.1
Defline:  (1 of 1) PTHR10288:SF160 - RNA-BINDING KH DOMAIN-CONTAINING PROTEIN Genomic Order:  7
Name:  ? Cagra.1080s0007 Secondary Identifier:  ? PAC:28912263
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1080s0007 0.5kb upstream 0.5kb upstream 3217 true Scaffold1080: 37024-40240 Capsella grandiflora
Cagra.1080s0007 0.5kb upstream 0.5kb upstream 500 false Scaffold1080: 39741-40240 Capsella grandiflora
Cagra.1080s0007 0.5kb downstream 0.5kb downstream 3217 true Scaffold1080: 36524-39740 Capsella grandiflora
Cagra.1080s0007 0.5kb downstream 0.5kb downstream 500 false Scaffold1080: 36524-37023 Capsella grandiflora
Cagra.1080s0007 1.0kb upstream 1.0kb upstream 3717 true Scaffold1080: 37024-40740 Capsella grandiflora
Cagra.1080s0007 1.0kb upstream 1.0kb upstream 1000 false Scaffold1080: 39741-40740 Capsella grandiflora
Cagra.1080s0007 1.0kb downstream 1.0kb downstream 3717 true Scaffold1080: 36024-39740 Capsella grandiflora
Cagra.1080s0007 1.0kb downstream 1.0kb downstream 1000 false Scaffold1080: 36024-37023 Capsella grandiflora
Cagra.1080s0007 2.0kb upstream 2.0kb upstream 4717 true Scaffold1080: 37024-41740 Capsella grandiflora
Cagra.1080s0007 2.0kb upstream 2.0kb upstream 2000 false Scaffold1080: 39741-41740 Capsella grandiflora
Cagra.1080s0007 2.0kb downstream 2.0kb downstream 4717 true Scaffold1080: 35024-39740 Capsella grandiflora
Cagra.1080s0007 2.0kb downstream 2.0kb downstream 2000 false Scaffold1080: 35024-37023 Capsella grandiflora
Cagra.1080s0007 5.0kb upstream 5.0kb upstream 7717 true Scaffold1080: 37024-44740 Capsella grandiflora
Cagra.1080s0007 5.0kb upstream 5.0kb upstream 5000 false Scaffold1080: 39741-44740 Capsella grandiflora
Cagra.1080s0007 5.0kb downstream 5.0kb downstream 7717 true Scaffold1080: 32024-39740 Capsella grandiflora
Cagra.1080s0007 5.0kb downstream 5.0kb downstream 5000 false Scaffold1080: 32024-37023 Capsella grandiflora
Cagra.1080s0007 10.0kb upstream 10.0kb upstream 12717 true Scaffold1080: 37024-49740 Capsella grandiflora
Cagra.1080s0007 10.0kb upstream 10.0kb upstream 10000 false Scaffold1080: 39741-49740 Capsella grandiflora
Cagra.1080s0007 10.0kb downstream 10.0kb downstream 12717 true Scaffold1080: 27024-39740 Capsella grandiflora
Cagra.1080s0007 10.0kb downstream 10.0kb downstream 10000 false Scaffold1080: 27024-37023 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363340 5261 Brassicaceae View MSA
123831434 5264 Brassicales-Malvales View MSA
124321727 5266 SBM View MSA
124247686 5268 Malvidae View MSA
124070518 5270 Rosid View MSA
123744817 5271 Pentapetalae View MSA
122797103 5272 Eudicot View MSA
122049280 5273 Angiosperm View MSA
121348372 5274 Embryophyte View MSA
123428845 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain