Gene : Cagra.1013s0021 C. grandiflora v1.1
Defline:  (1 of 3) PTHR10314:SF125 - THREONINE SYNTHASE 2, CHLOROPLASTIC Genomic Order:  21
Name:  ? Cagra.1013s0021 Secondary Identifier:  ? PAC:28916273
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora HOMOSER-THRESYN-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-3001 Capsella grandiflora pathologic  
Cgrandiflora PWY-724 Capsella grandiflora pathologic  
Cgrandiflora THRESYN-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1013s0021 0.5kb upstream 0.5kb upstream 4790 true Scaffold1013: 71955-76744 Capsella grandiflora
Cagra.1013s0021 0.5kb upstream 0.5kb upstream 500 false Scaffold1013: 71955-72454 Capsella grandiflora
Cagra.1013s0021 0.5kb downstream 0.5kb downstream 4790 true Scaffold1013: 72455-77244 Capsella grandiflora
Cagra.1013s0021 0.5kb downstream 0.5kb downstream 500 false Scaffold1013: 76745-77244 Capsella grandiflora
Cagra.1013s0021 1.0kb upstream 1.0kb upstream 5290 true Scaffold1013: 71455-76744 Capsella grandiflora
Cagra.1013s0021 1.0kb upstream 1.0kb upstream 1000 false Scaffold1013: 71455-72454 Capsella grandiflora
Cagra.1013s0021 1.0kb downstream 1.0kb downstream 5290 true Scaffold1013: 72455-77744 Capsella grandiflora
Cagra.1013s0021 1.0kb downstream 1.0kb downstream 1000 false Scaffold1013: 76745-77744 Capsella grandiflora
Cagra.1013s0021 2.0kb upstream 2.0kb upstream 6290 true Scaffold1013: 70455-76744 Capsella grandiflora
Cagra.1013s0021 2.0kb upstream 2.0kb upstream 2000 false Scaffold1013: 70455-72454 Capsella grandiflora
Cagra.1013s0021 2.0kb downstream 2.0kb downstream 6290 true Scaffold1013: 72455-78744 Capsella grandiflora
Cagra.1013s0021 2.0kb downstream 2.0kb downstream 2000 false Scaffold1013: 76745-78744 Capsella grandiflora
Cagra.1013s0021 5.0kb upstream 5.0kb upstream 9290 true Scaffold1013: 67455-76744 Capsella grandiflora
Cagra.1013s0021 5.0kb upstream 5.0kb upstream 5000 false Scaffold1013: 67455-72454 Capsella grandiflora
Cagra.1013s0021 5.0kb downstream 5.0kb downstream 9290 true Scaffold1013: 72455-81744 Capsella grandiflora
Cagra.1013s0021 5.0kb downstream 5.0kb downstream 5000 false Scaffold1013: 76745-81744 Capsella grandiflora
Cagra.1013s0021 10.0kb upstream 10.0kb upstream 14290 true Scaffold1013: 62455-76744 Capsella grandiflora
Cagra.1013s0021 10.0kb upstream 10.0kb upstream 10000 false Scaffold1013: 62455-72454 Capsella grandiflora
Cagra.1013s0021 10.0kb downstream 10.0kb downstream 14290 true Scaffold1013: 72455-86744 Capsella grandiflora
Cagra.1013s0021 10.0kb downstream 10.0kb downstream 10000 false Scaffold1013: 76745-86744 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041159 5273 Angiosperm View MSA
122375349 5261 Brassicaceae View MSA
123800935 5264 Brassicales-Malvales View MSA
124298290 5266 SBM View MSA
124251759 5268 Malvidae View MSA
124069376 5270 Rosid View MSA
123748441 5271 Pentapetalae View MSA
122786729 5272 Eudicot View MSA
121349368 5274 Embryophyte View MSA
123424940 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain