Gene : Cagra.1013s0044 C. grandiflora v1.1
Defline:  (1 of 1) PTHR10947 - PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 Genomic Order:  44
Name:  ? Cagra.1013s0044 Secondary Identifier:  ? PAC:28916259
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora TRNA-CHARGING-PWY Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1013s0044 0.5kb upstream 0.5kb upstream 5069 true Scaffold1013: 152007-157075 Capsella grandiflora
Cagra.1013s0044 0.5kb upstream 0.5kb upstream 500 false Scaffold1013: 152007-152506 Capsella grandiflora
Cagra.1013s0044 0.5kb downstream 0.5kb downstream 5069 true Scaffold1013: 152507-157575 Capsella grandiflora
Cagra.1013s0044 0.5kb downstream 0.5kb downstream 500 false Scaffold1013: 157076-157575 Capsella grandiflora
Cagra.1013s0044 1.0kb upstream 1.0kb upstream 5569 true Scaffold1013: 151507-157075 Capsella grandiflora
Cagra.1013s0044 1.0kb upstream 1.0kb upstream 1000 false Scaffold1013: 151507-152506 Capsella grandiflora
Cagra.1013s0044 1.0kb downstream 1.0kb downstream 5569 true Scaffold1013: 152507-158075 Capsella grandiflora
Cagra.1013s0044 1.0kb downstream 1.0kb downstream 1000 false Scaffold1013: 157076-158075 Capsella grandiflora
Cagra.1013s0044 2.0kb upstream 2.0kb upstream 6569 true Scaffold1013: 150507-157075 Capsella grandiflora
Cagra.1013s0044 2.0kb upstream 2.0kb upstream 2000 false Scaffold1013: 150507-152506 Capsella grandiflora
Cagra.1013s0044 2.0kb downstream 2.0kb downstream 6569 true Scaffold1013: 152507-159075 Capsella grandiflora
Cagra.1013s0044 2.0kb downstream 2.0kb downstream 2000 false Scaffold1013: 157076-159075 Capsella grandiflora
Cagra.1013s0044 5.0kb upstream 5.0kb upstream 9569 true Scaffold1013: 147507-157075 Capsella grandiflora
Cagra.1013s0044 5.0kb upstream 5.0kb upstream 5000 false Scaffold1013: 147507-152506 Capsella grandiflora
Cagra.1013s0044 5.0kb downstream 5.0kb downstream 9569 true Scaffold1013: 152507-162075 Capsella grandiflora
Cagra.1013s0044 5.0kb downstream 5.0kb downstream 5000 false Scaffold1013: 157076-162075 Capsella grandiflora
Cagra.1013s0044 10.0kb upstream 10.0kb upstream 14569 true Scaffold1013: 142507-157075 Capsella grandiflora
Cagra.1013s0044 10.0kb upstream 10.0kb upstream 10000 false Scaffold1013: 142507-152506 Capsella grandiflora
Cagra.1013s0044 10.0kb downstream 10.0kb downstream 14569 true Scaffold1013: 152507-167075 Capsella grandiflora
Cagra.1013s0044 10.0kb downstream 10.0kb downstream 10000 false Scaffold1013: 157076-167075 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361573 5261 Brassicaceae View MSA
123834957 5264 Brassicales-Malvales View MSA
124339817 5266 SBM View MSA
124238696 5268 Malvidae View MSA
124062601 5270 Rosid View MSA
123738962 5271 Pentapetalae View MSA
122792851 5272 Eudicot View MSA
122042437 5273 Angiosperm View MSA
121345306 5274 Embryophyte View MSA
123425015 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain