Gene : Cagra.1013s0047 C. grandiflora v1.1
Defline:  (1 of 2) PTHR11771:SF38 - LIPOXYGENASE 3, CHLOROPLASTIC-RELATED Genomic Order:  47
Name:  ? Cagra.1013s0047 Secondary Identifier:  ? PAC:28916260
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-5409 Capsella grandiflora pathologic  
Cgrandiflora PWY-5410 Capsella grandiflora pathologic  
Cgrandiflora PWY-735 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1013s0047 0.5kb upstream 0.5kb upstream 4633 true Scaffold1013: 164726-169358 Capsella grandiflora
Cagra.1013s0047 0.5kb upstream 0.5kb upstream 500 false Scaffold1013: 168859-169358 Capsella grandiflora
Cagra.1013s0047 0.5kb downstream 0.5kb downstream 4633 true Scaffold1013: 164226-168858 Capsella grandiflora
Cagra.1013s0047 0.5kb downstream 0.5kb downstream 500 false Scaffold1013: 164226-164725 Capsella grandiflora
Cagra.1013s0047 1.0kb upstream 1.0kb upstream 5133 true Scaffold1013: 164726-169858 Capsella grandiflora
Cagra.1013s0047 1.0kb upstream 1.0kb upstream 1000 false Scaffold1013: 168859-169858 Capsella grandiflora
Cagra.1013s0047 1.0kb downstream 1.0kb downstream 5133 true Scaffold1013: 163726-168858 Capsella grandiflora
Cagra.1013s0047 1.0kb downstream 1.0kb downstream 1000 false Scaffold1013: 163726-164725 Capsella grandiflora
Cagra.1013s0047 2.0kb upstream 2.0kb upstream 6133 true Scaffold1013: 164726-170858 Capsella grandiflora
Cagra.1013s0047 2.0kb upstream 2.0kb upstream 2000 false Scaffold1013: 168859-170858 Capsella grandiflora
Cagra.1013s0047 2.0kb downstream 2.0kb downstream 6133 true Scaffold1013: 162726-168858 Capsella grandiflora
Cagra.1013s0047 2.0kb downstream 2.0kb downstream 2000 false Scaffold1013: 162726-164725 Capsella grandiflora
Cagra.1013s0047 5.0kb upstream 5.0kb upstream 9133 true Scaffold1013: 164726-173858 Capsella grandiflora
Cagra.1013s0047 5.0kb upstream 5.0kb upstream 5000 false Scaffold1013: 168859-173858 Capsella grandiflora
Cagra.1013s0047 5.0kb downstream 5.0kb downstream 9133 true Scaffold1013: 159726-168858 Capsella grandiflora
Cagra.1013s0047 5.0kb downstream 5.0kb downstream 5000 false Scaffold1013: 159726-164725 Capsella grandiflora
Cagra.1013s0047 10.0kb upstream 10.0kb upstream 14133 true Scaffold1013: 164726-178858 Capsella grandiflora
Cagra.1013s0047 10.0kb upstream 10.0kb upstream 10000 false Scaffold1013: 168859-178858 Capsella grandiflora
Cagra.1013s0047 10.0kb downstream 10.0kb downstream 14133 true Scaffold1013: 154726-168858 Capsella grandiflora
Cagra.1013s0047 10.0kb downstream 10.0kb downstream 10000 false Scaffold1013: 154726-164725 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371456 5261 Brassicaceae View MSA
123836970 5264 Brassicales-Malvales View MSA
124344958 5266 SBM View MSA
124254155 5268 Malvidae View MSA
124060591 5270 Rosid View MSA
123743150 5271 Pentapetalae View MSA
122789243 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain