Gene : Cagra.1329s0006 C. grandiflora v1.1
Defline:  (1 of 1) PTHR34803:SF2 - PHOTOSYSTEM I REACTION CENTER SUBUNIT XI, CHLOROPLASTIC Genomic Order:  6
Name:  ? Cagra.1329s0006 Secondary Identifier:  ? PAC:28896754
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PHOTOALL-PWY Capsella grandiflora pathologic  
Cgrandiflora PWY-101 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1329s0006 0.5kb upstream 0.5kb upstream 1546 true Scaffold1329: 23028-24573 Capsella grandiflora
Cagra.1329s0006 0.5kb upstream 0.5kb upstream 500 false Scaffold1329: 24074-24573 Capsella grandiflora
Cagra.1329s0006 0.5kb downstream 0.5kb downstream 1546 true Scaffold1329: 22528-24073 Capsella grandiflora
Cagra.1329s0006 0.5kb downstream 0.5kb downstream 500 false Scaffold1329: 22528-23027 Capsella grandiflora
Cagra.1329s0006 1.0kb upstream 1.0kb upstream 2046 true Scaffold1329: 23028-25073 Capsella grandiflora
Cagra.1329s0006 1.0kb upstream 1.0kb upstream 1000 false Scaffold1329: 24074-25073 Capsella grandiflora
Cagra.1329s0006 1.0kb downstream 1.0kb downstream 2046 true Scaffold1329: 22028-24073 Capsella grandiflora
Cagra.1329s0006 1.0kb downstream 1.0kb downstream 1000 false Scaffold1329: 22028-23027 Capsella grandiflora
Cagra.1329s0006 2.0kb upstream 2.0kb upstream 3046 true Scaffold1329: 23028-26073 Capsella grandiflora
Cagra.1329s0006 2.0kb upstream 2.0kb upstream 2000 false Scaffold1329: 24074-26073 Capsella grandiflora
Cagra.1329s0006 2.0kb downstream 2.0kb downstream 3046 true Scaffold1329: 21028-24073 Capsella grandiflora
Cagra.1329s0006 2.0kb downstream 2.0kb downstream 2000 false Scaffold1329: 21028-23027 Capsella grandiflora
Cagra.1329s0006 5.0kb upstream 5.0kb upstream 6046 true Scaffold1329: 23028-29073 Capsella grandiflora
Cagra.1329s0006 5.0kb upstream 5.0kb upstream 5000 false Scaffold1329: 24074-29073 Capsella grandiflora
Cagra.1329s0006 5.0kb downstream 5.0kb downstream 6046 true Scaffold1329: 18028-24073 Capsella grandiflora
Cagra.1329s0006 5.0kb downstream 5.0kb downstream 5000 false Scaffold1329: 18028-23027 Capsella grandiflora
Cagra.1329s0006 10.0kb upstream 10.0kb upstream 11046 true Scaffold1329: 23028-34073 Capsella grandiflora
Cagra.1329s0006 10.0kb upstream 10.0kb upstream 10000 false Scaffold1329: 24074-34073 Capsella grandiflora
Cagra.1329s0006 10.0kb downstream 10.0kb downstream 11046 true Scaffold1329: 13028-24073 Capsella grandiflora
Cagra.1329s0006 10.0kb downstream 10.0kb downstream 10000 false Scaffold1329: 13028-23027 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040995 5273 Angiosperm View MSA
122378869 5261 Brassicaceae View MSA
123838077 5264 Brassicales-Malvales View MSA
124343130 5266 SBM View MSA
124243038 5268 Malvidae View MSA
124061167 5270 Rosid View MSA
123750401 5271 Pentapetalae View MSA
122793402 5272 Eudicot View MSA
121343870 5274 Embryophyte View MSA
123424325 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain