Gene : Cagra.1329s0010 C. grandiflora v1.1
Defline:  (1 of 1) PTHR31742:SF1 - RPA-INTERACTING PROTEIN Genomic Order:  10
Name:  ? Cagra.1329s0010 Secondary Identifier:  ? PAC:28896753
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1329s0010 0.5kb upstream 0.5kb upstream 1869 true Scaffold1329: 47468-49336 Capsella grandiflora
Cagra.1329s0010 0.5kb upstream 0.5kb upstream 500 false Scaffold1329: 48837-49336 Capsella grandiflora
Cagra.1329s0010 0.5kb downstream 0.5kb downstream 1869 true Scaffold1329: 46968-48836 Capsella grandiflora
Cagra.1329s0010 0.5kb downstream 0.5kb downstream 500 false Scaffold1329: 46968-47467 Capsella grandiflora
Cagra.1329s0010 1.0kb upstream 1.0kb upstream 2369 true Scaffold1329: 47468-49836 Capsella grandiflora
Cagra.1329s0010 1.0kb upstream 1.0kb upstream 1000 false Scaffold1329: 48837-49836 Capsella grandiflora
Cagra.1329s0010 1.0kb downstream 1.0kb downstream 2369 true Scaffold1329: 46468-48836 Capsella grandiflora
Cagra.1329s0010 1.0kb downstream 1.0kb downstream 1000 false Scaffold1329: 46468-47467 Capsella grandiflora
Cagra.1329s0010 2.0kb upstream 2.0kb upstream 3369 true Scaffold1329: 47468-50836 Capsella grandiflora
Cagra.1329s0010 2.0kb upstream 2.0kb upstream 2000 false Scaffold1329: 48837-50836 Capsella grandiflora
Cagra.1329s0010 2.0kb downstream 2.0kb downstream 3369 true Scaffold1329: 45468-48836 Capsella grandiflora
Cagra.1329s0010 2.0kb downstream 2.0kb downstream 2000 false Scaffold1329: 45468-47467 Capsella grandiflora
Cagra.1329s0010 5.0kb upstream 5.0kb upstream 6369 true Scaffold1329: 47468-53836 Capsella grandiflora
Cagra.1329s0010 5.0kb upstream 5.0kb upstream 5000 false Scaffold1329: 48837-53836 Capsella grandiflora
Cagra.1329s0010 5.0kb downstream 5.0kb downstream 6369 true Scaffold1329: 42468-48836 Capsella grandiflora
Cagra.1329s0010 5.0kb downstream 5.0kb downstream 5000 false Scaffold1329: 42468-47467 Capsella grandiflora
Cagra.1329s0010 10.0kb upstream 10.0kb upstream 11369 true Scaffold1329: 47468-58836 Capsella grandiflora
Cagra.1329s0010 10.0kb upstream 10.0kb upstream 10000 false Scaffold1329: 48837-58836 Capsella grandiflora
Cagra.1329s0010 10.0kb downstream 10.0kb downstream 11369 true Scaffold1329: 37468-48836 Capsella grandiflora
Cagra.1329s0010 10.0kb downstream 10.0kb downstream 10000 false Scaffold1329: 37468-47467 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369563 5261 Brassicaceae View MSA
123829444 5264 Brassicales-Malvales View MSA
124341150 5266 SBM View MSA
124237734 5268 Malvidae View MSA
124061489 5270 Rosid View MSA
123739858 5271 Pentapetalae View MSA
122789905 5272 Eudicot View MSA
122044802 5273 Angiosperm View MSA
121346952 5274 Embryophyte View MSA
123424751 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain