Gene : Cagra.1336s0012 C. grandiflora v1.1
Defline:  (1 of 3) PTHR10655//PTHR10655:SF34 - LYSOPHOSPHOLIPASE-RELATED Genomic Order:  12
Name:  ? Cagra.1336s0012 Secondary Identifier:  ? PAC:28895982
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7409 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1336s0012 0.5kb upstream 0.5kb upstream 2928 true Scaffold1336: 36602-39529 Capsella grandiflora
Cagra.1336s0012 0.5kb upstream 0.5kb upstream 500 false Scaffold1336: 39030-39529 Capsella grandiflora
Cagra.1336s0012 0.5kb downstream 0.5kb downstream 2928 true Scaffold1336: 36102-39029 Capsella grandiflora
Cagra.1336s0012 0.5kb downstream 0.5kb downstream 500 false Scaffold1336: 36102-36601 Capsella grandiflora
Cagra.1336s0012 1.0kb upstream 1.0kb upstream 3428 true Scaffold1336: 36602-40029 Capsella grandiflora
Cagra.1336s0012 1.0kb upstream 1.0kb upstream 1000 false Scaffold1336: 39030-40029 Capsella grandiflora
Cagra.1336s0012 1.0kb downstream 1.0kb downstream 3428 true Scaffold1336: 35602-39029 Capsella grandiflora
Cagra.1336s0012 1.0kb downstream 1.0kb downstream 1000 false Scaffold1336: 35602-36601 Capsella grandiflora
Cagra.1336s0012 2.0kb upstream 2.0kb upstream 4428 true Scaffold1336: 36602-41029 Capsella grandiflora
Cagra.1336s0012 2.0kb upstream 2.0kb upstream 2000 false Scaffold1336: 39030-41029 Capsella grandiflora
Cagra.1336s0012 2.0kb downstream 2.0kb downstream 4428 true Scaffold1336: 34602-39029 Capsella grandiflora
Cagra.1336s0012 2.0kb downstream 2.0kb downstream 2000 false Scaffold1336: 34602-36601 Capsella grandiflora
Cagra.1336s0012 5.0kb upstream 5.0kb upstream 7428 true Scaffold1336: 36602-44029 Capsella grandiflora
Cagra.1336s0012 5.0kb upstream 5.0kb upstream 5000 false Scaffold1336: 39030-44029 Capsella grandiflora
Cagra.1336s0012 5.0kb downstream 5.0kb downstream 7428 true Scaffold1336: 31602-39029 Capsella grandiflora
Cagra.1336s0012 5.0kb downstream 5.0kb downstream 5000 false Scaffold1336: 31602-36601 Capsella grandiflora
Cagra.1336s0012 10.0kb upstream 10.0kb upstream 12428 true Scaffold1336: 36602-49029 Capsella grandiflora
Cagra.1336s0012 10.0kb upstream 10.0kb upstream 10000 false Scaffold1336: 39030-49029 Capsella grandiflora
Cagra.1336s0012 10.0kb downstream 10.0kb downstream 12428 true Scaffold1336: 26602-39029 Capsella grandiflora
Cagra.1336s0012 10.0kb downstream 10.0kb downstream 10000 false Scaffold1336: 26602-36601 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361094 5261 Brassicaceae View MSA
123836615 5264 Brassicales-Malvales View MSA
124338971 5266 SBM View MSA
124245146 5268 Malvidae View MSA
124070848 5270 Rosid View MSA
123747021 5271 Pentapetalae View MSA
122795492 5272 Eudicot View MSA
122046747 5273 Angiosperm View MSA
121349351 5274 Embryophyte View MSA
123428773 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain