Gene : Cagra.1360s0001 C. grandiflora v1.1
Defline:  (1 of 1) PTHR10044:SF106 - RING/U-BOX DOMAIN-CONTAINING PROTEIN Genomic Order:  1
Name:  ? Cagra.1360s0001 Secondary Identifier:  ? PAC:28918495
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-7511 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1360s0001 0.5kb upstream 0.5kb upstream 4780 true Scaffold1360: 7-4786 Capsella grandiflora
Cagra.1360s0001 0.5kb upstream 0.5kb upstream 500 false Scaffold1360: 4287-4786 Capsella grandiflora
Cagra.1360s0001 0.5kb downstream 0.5kb downstream 4286 true Scaffold1360: 1-4286 Capsella grandiflora
Cagra.1360s0001 0.5kb downstream 0.5kb downstream 6 false Scaffold1360: 1-6 Capsella grandiflora
Cagra.1360s0001 1.0kb upstream 1.0kb upstream 5280 true Scaffold1360: 7-5286 Capsella grandiflora
Cagra.1360s0001 1.0kb upstream 1.0kb upstream 1000 false Scaffold1360: 4287-5286 Capsella grandiflora
Cagra.1360s0001 1.0kb downstream 1.0kb downstream 4286 true Scaffold1360: 1-4286 Capsella grandiflora
Cagra.1360s0001 1.0kb downstream 1.0kb downstream 6 false Scaffold1360: 1-6 Capsella grandiflora
Cagra.1360s0001 2.0kb upstream 2.0kb upstream 6280 true Scaffold1360: 7-6286 Capsella grandiflora
Cagra.1360s0001 2.0kb upstream 2.0kb upstream 2000 false Scaffold1360: 4287-6286 Capsella grandiflora
Cagra.1360s0001 2.0kb downstream 2.0kb downstream 4286 true Scaffold1360: 1-4286 Capsella grandiflora
Cagra.1360s0001 2.0kb downstream 2.0kb downstream 6 false Scaffold1360: 1-6 Capsella grandiflora
Cagra.1360s0001 5.0kb upstream 5.0kb upstream 9280 true Scaffold1360: 7-9286 Capsella grandiflora
Cagra.1360s0001 5.0kb upstream 5.0kb upstream 5000 false Scaffold1360: 4287-9286 Capsella grandiflora
Cagra.1360s0001 5.0kb downstream 5.0kb downstream 4286 true Scaffold1360: 1-4286 Capsella grandiflora
Cagra.1360s0001 5.0kb downstream 5.0kb downstream 6 false Scaffold1360: 1-6 Capsella grandiflora
Cagra.1360s0001 10.0kb upstream 10.0kb upstream 14280 true Scaffold1360: 7-14286 Capsella grandiflora
Cagra.1360s0001 10.0kb upstream 10.0kb upstream 10000 false Scaffold1360: 4287-14286 Capsella grandiflora
Cagra.1360s0001 10.0kb downstream 10.0kb downstream 4286 true Scaffold1360: 1-4286 Capsella grandiflora
Cagra.1360s0001 10.0kb downstream 10.0kb downstream 6 false Scaffold1360: 1-6 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364437 5261 Brassicaceae View MSA
123831077 5264 Brassicales-Malvales View MSA
124346188 5266 SBM View MSA
124252916 5268 Malvidae View MSA
124064166 5270 Rosid View MSA
123743439 5271 Pentapetalae View MSA
122770659 5272 Eudicot View MSA
122041881 5273 Angiosperm View MSA
121350906 5274 Embryophyte View MSA
123381933 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain