Gene : Cagra.1301s0011 C. grandiflora v1.1
Defline:  (1 of 3) PTHR31458:SF3 - POLYGALACTURONASE NON-CATALYTIC SUBUNIT JP630-RELATED Genomic Order:  11
Name:  ? Cagra.1301s0011 Secondary Identifier:  ? PAC:28917640
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1301s0011 0.5kb upstream 0.5kb upstream 2506 true Scaffold1301: 41300-43805 Capsella grandiflora
Cagra.1301s0011 0.5kb upstream 0.5kb upstream 500 false Scaffold1301: 43306-43805 Capsella grandiflora
Cagra.1301s0011 0.5kb downstream 0.5kb downstream 2506 true Scaffold1301: 40800-43305 Capsella grandiflora
Cagra.1301s0011 0.5kb downstream 0.5kb downstream 500 false Scaffold1301: 40800-41299 Capsella grandiflora
Cagra.1301s0011 1.0kb upstream 1.0kb upstream 3006 true Scaffold1301: 41300-44305 Capsella grandiflora
Cagra.1301s0011 1.0kb upstream 1.0kb upstream 1000 false Scaffold1301: 43306-44305 Capsella grandiflora
Cagra.1301s0011 1.0kb downstream 1.0kb downstream 3006 true Scaffold1301: 40300-43305 Capsella grandiflora
Cagra.1301s0011 1.0kb downstream 1.0kb downstream 1000 false Scaffold1301: 40300-41299 Capsella grandiflora
Cagra.1301s0011 2.0kb upstream 2.0kb upstream 4006 true Scaffold1301: 41300-45305 Capsella grandiflora
Cagra.1301s0011 2.0kb upstream 2.0kb upstream 2000 false Scaffold1301: 43306-45305 Capsella grandiflora
Cagra.1301s0011 2.0kb downstream 2.0kb downstream 4006 true Scaffold1301: 39300-43305 Capsella grandiflora
Cagra.1301s0011 2.0kb downstream 2.0kb downstream 2000 false Scaffold1301: 39300-41299 Capsella grandiflora
Cagra.1301s0011 5.0kb upstream 5.0kb upstream 7006 true Scaffold1301: 41300-48305 Capsella grandiflora
Cagra.1301s0011 5.0kb upstream 5.0kb upstream 5000 false Scaffold1301: 43306-48305 Capsella grandiflora
Cagra.1301s0011 5.0kb downstream 5.0kb downstream 7006 true Scaffold1301: 36300-43305 Capsella grandiflora
Cagra.1301s0011 5.0kb downstream 5.0kb downstream 5000 false Scaffold1301: 36300-41299 Capsella grandiflora
Cagra.1301s0011 10.0kb upstream 10.0kb upstream 12006 true Scaffold1301: 41300-53305 Capsella grandiflora
Cagra.1301s0011 10.0kb upstream 10.0kb upstream 10000 false Scaffold1301: 43306-53305 Capsella grandiflora
Cagra.1301s0011 10.0kb downstream 10.0kb downstream 12006 true Scaffold1301: 31300-43305 Capsella grandiflora
Cagra.1301s0011 10.0kb downstream 10.0kb downstream 10000 false Scaffold1301: 31300-41299 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372157 5261 Brassicaceae View MSA
123840540 5264 Brassicales-Malvales View MSA
124322738 5266 SBM View MSA
124169209 5268 Malvidae View MSA
124060515 5270 Rosid View MSA
123747690 5271 Pentapetalae View MSA
122795038 5272 Eudicot View MSA
122050223 5273 Angiosperm View MSA
121351029 5274 Embryophyte View MSA
123381981 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain