Gene : Cagra.1305s0030 C. grandiflora v1.1
Defline:  (1 of 1) PTHR10509//PTHR10509:SF23 - O-METHYLTRANSFERASE-RELATED Genomic Order:  30
Name:  ? Cagra.1305s0030 Secondary Identifier:  ? PAC:28900679
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Cgrandiflora PWY-1121 Capsella grandiflora pathologic  
Cgrandiflora PWY-361 Capsella grandiflora pathologic  
Cgrandiflora PWY-6039 Capsella grandiflora pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1305s0030 0.5kb upstream 0.5kb upstream 2063 true Scaffold1305: 101721-103783 Capsella grandiflora
Cagra.1305s0030 0.5kb upstream 0.5kb upstream 500 false Scaffold1305: 101721-102220 Capsella grandiflora
Cagra.1305s0030 0.5kb downstream 0.5kb downstream 2063 true Scaffold1305: 102221-104283 Capsella grandiflora
Cagra.1305s0030 0.5kb downstream 0.5kb downstream 500 false Scaffold1305: 103784-104283 Capsella grandiflora
Cagra.1305s0030 1.0kb upstream 1.0kb upstream 2563 true Scaffold1305: 101221-103783 Capsella grandiflora
Cagra.1305s0030 1.0kb upstream 1.0kb upstream 1000 false Scaffold1305: 101221-102220 Capsella grandiflora
Cagra.1305s0030 1.0kb downstream 1.0kb downstream 2563 true Scaffold1305: 102221-104783 Capsella grandiflora
Cagra.1305s0030 1.0kb downstream 1.0kb downstream 1000 false Scaffold1305: 103784-104783 Capsella grandiflora
Cagra.1305s0030 2.0kb upstream 2.0kb upstream 3563 true Scaffold1305: 100221-103783 Capsella grandiflora
Cagra.1305s0030 2.0kb upstream 2.0kb upstream 2000 false Scaffold1305: 100221-102220 Capsella grandiflora
Cagra.1305s0030 2.0kb downstream 2.0kb downstream 3563 true Scaffold1305: 102221-105783 Capsella grandiflora
Cagra.1305s0030 2.0kb downstream 2.0kb downstream 2000 false Scaffold1305: 103784-105783 Capsella grandiflora
Cagra.1305s0030 5.0kb upstream 5.0kb upstream 6563 true Scaffold1305: 97221-103783 Capsella grandiflora
Cagra.1305s0030 5.0kb upstream 5.0kb upstream 5000 false Scaffold1305: 97221-102220 Capsella grandiflora
Cagra.1305s0030 5.0kb downstream 5.0kb downstream 6563 true Scaffold1305: 102221-108783 Capsella grandiflora
Cagra.1305s0030 5.0kb downstream 5.0kb downstream 5000 false Scaffold1305: 103784-108783 Capsella grandiflora
Cagra.1305s0030 10.0kb upstream 10.0kb upstream 11563 true Scaffold1305: 92221-103783 Capsella grandiflora
Cagra.1305s0030 10.0kb upstream 10.0kb upstream 10000 false Scaffold1305: 92221-102220 Capsella grandiflora
Cagra.1305s0030 10.0kb downstream 10.0kb downstream 11563 true Scaffold1305: 102221-113783 Capsella grandiflora
Cagra.1305s0030 10.0kb downstream 10.0kb downstream 10000 false Scaffold1305: 103784-113783 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363618 5261 Brassicaceae View MSA
123839836 5264 Brassicales-Malvales View MSA
124344783 5266 SBM View MSA
124253255 5268 Malvidae View MSA
124070061 5270 Rosid View MSA
123746911 5271 Pentapetalae View MSA
122790683 5272 Eudicot View MSA
122043643 5273 Angiosperm View MSA
121346702 5274 Embryophyte View MSA
123427843 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain