Gene : Cagra.1310s0008 C. grandiflora v1.1
Defline:  (1 of 2) PTHR31642:SF11 - SHIKIMATE O-HYDROXYCINNAMOYLTRANSFERASE Genomic Order:  8
Name:  ? Cagra.1310s0008 Secondary Identifier:  ? PAC:28904763
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Cagra.1310s0008 0.5kb upstream 0.5kb upstream 2282 true Scaffold1310: 38892-41173 Capsella grandiflora
Cagra.1310s0008 0.5kb upstream 0.5kb upstream 500 false Scaffold1310: 38892-39391 Capsella grandiflora
Cagra.1310s0008 0.5kb downstream 0.5kb downstream 2282 true Scaffold1310: 39392-41673 Capsella grandiflora
Cagra.1310s0008 0.5kb downstream 0.5kb downstream 500 false Scaffold1310: 41174-41673 Capsella grandiflora
Cagra.1310s0008 1.0kb upstream 1.0kb upstream 2782 true Scaffold1310: 38392-41173 Capsella grandiflora
Cagra.1310s0008 1.0kb upstream 1.0kb upstream 1000 false Scaffold1310: 38392-39391 Capsella grandiflora
Cagra.1310s0008 1.0kb downstream 1.0kb downstream 2782 true Scaffold1310: 39392-42173 Capsella grandiflora
Cagra.1310s0008 1.0kb downstream 1.0kb downstream 1000 false Scaffold1310: 41174-42173 Capsella grandiflora
Cagra.1310s0008 2.0kb upstream 2.0kb upstream 3782 true Scaffold1310: 37392-41173 Capsella grandiflora
Cagra.1310s0008 2.0kb upstream 2.0kb upstream 2000 false Scaffold1310: 37392-39391 Capsella grandiflora
Cagra.1310s0008 2.0kb downstream 2.0kb downstream 3782 true Scaffold1310: 39392-43173 Capsella grandiflora
Cagra.1310s0008 2.0kb downstream 2.0kb downstream 2000 false Scaffold1310: 41174-43173 Capsella grandiflora
Cagra.1310s0008 5.0kb upstream 5.0kb upstream 6782 true Scaffold1310: 34392-41173 Capsella grandiflora
Cagra.1310s0008 5.0kb upstream 5.0kb upstream 5000 false Scaffold1310: 34392-39391 Capsella grandiflora
Cagra.1310s0008 5.0kb downstream 5.0kb downstream 6782 true Scaffold1310: 39392-46173 Capsella grandiflora
Cagra.1310s0008 5.0kb downstream 5.0kb downstream 5000 false Scaffold1310: 41174-46173 Capsella grandiflora
Cagra.1310s0008 10.0kb upstream 10.0kb upstream 11782 true Scaffold1310: 29392-41173 Capsella grandiflora
Cagra.1310s0008 10.0kb upstream 10.0kb upstream 10000 false Scaffold1310: 29392-39391 Capsella grandiflora
Cagra.1310s0008 10.0kb downstream 10.0kb downstream 11782 true Scaffold1310: 39392-51173 Capsella grandiflora
Cagra.1310s0008 10.0kb downstream 10.0kb downstream 10000 false Scaffold1310: 41174-51173 Capsella grandiflora

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122332481 5261 Brassicaceae Singleton cluster - no MSA
123837697 5264 Brassicales-Malvales View MSA
124343720 5266 SBM View MSA
124250027 5268 Malvidae View MSA
124074856 5270 Rosid View MSA
123753544 5271 Pentapetalae View MSA
122797119 5272 Eudicot View MSA
122051643 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain